Gene detail information of Glyur000029s00003641 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30900.1 | 4.00E-105 | TRICHOME BIREFRINGENCE-LIKE 43 |
| NR | XP_004500006.1 | 0 | PREDICTED: uncharacterized protein LOC101510811 [Cicer arietinum] |
| Swissprot | tr|Q6DR10|TBL43_ARATH | 3.00E-129 | Protein trichome birefringence-like 43 |
| trEMBL | tr|I3TAR2|I3TAR2_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK49604.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 347981 | 352527 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003641.1 | PF14416.1 | PMR5N | 43 | 96 | 7.70E-25 |
| Glyur000029s00003641.1 | PF13839.1 | PC-Esterase | 97 | 231 | 7.50E-32 |
| Glyur000029s00003641.1 | PF13839.1 | PC-Esterase | 243 | 327 | 7.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.384 |
| SRR1783600 | control | 5.076 |
| SRR1783602 | moderate drought stress | 2.208 |
| SRR1811619 | moderate drought stress | 1.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.933 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.354 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.620 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.437 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.958 |
| SRR2868004 | Drought Stress (root) | 19.641 |
| SRR2967015 | Control (root) | 17.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.804 |
| SRR9715740 | Leaf | 0.773 |
| SRR9715741 | Leaf | 0.281 |
| SRR9715739 | Root | 0.565 |
| SRR9715742 | Root | 9.362 |
| SRR9715743 | Root | 8.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.908 |
| SRR8400027 | Control - Root | 64.283 |