Gene detail

Gene detail information of Glyur000029s00003637

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G27070.1	tryptophan synthase beta-subunit 2
NR	XP_004500038.1	PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cicer arietinum]
COG	YP_007108541.1	tryptophan synthase subunit beta [Geitlerinema sp. PCC 7407]
Swissprot	tr\|P25269\|TRBP2_ARATH	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|I1N0T6\|I1N0T6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G12090.1}

Sequence

Transcript Sequence

>Glyur000029s00003637.1
ACCATTGACAGTGTTGTAATCTTCTTGTGCTTTCTTCTGTGCCCTTTTTTTTTCTGNATACAGACAAAATCCCCATATCCCCATCCCCATAATTCATATAAATTCCAAACACCCAATAACCTTTTTCACTTCCTTTCAGAATAAACCTTCAACATCAATTGGAAAATCTCACATGGNTTCCTCCATCACAAGCCTCAACTCTTCTTCAAGGTTGCTTCCCATTCCCAGAGAAGCATACCCATCTTCCCATTTCCCCTCAAACTTGCTAAAGCTTGTAACTTTTCCTCCTTCTTCCTCAGCTTCCAGAACCCCTTCTTCTGTCTCTTGCTCCCTCACCAGAGACCCTGCCTCTGTTNTGCCATTGCAGGAACACACCAAGCTTGAAAACGGGTCGGTTATGCTCCAGAGACCCGATTCGTTTGGCAGGTTTGGGAGGTTTGGTGGCAAGTATGTCCCTGAGACTCTAATGCATGCACTCACTGAGCTTGAGGCTGCGTTCCATGCCCTTACTGCTGATGAGGATTTTCAGAGAGAGCTGGCTGGGATTCTAAAAGACTATGTTGGTCGGGAGAGTCCTCTTTATTTTGCGGAAAGGTTGACGGAGCATTACAAGAGGCCTAATGGTGAAGGGCCTGACATTTATCTGAAGAGGGAAGATCTTAACCACACTGGGGCTCATAAAATTAACAATGCTGTTGCCCAAGCTTTGCTTGCCAAGACTTTGGGCAAAAAACGTATTATTGCTGAAACCGGAGCTGGGCAGCATGGAGTTGCCACTGCTACTGTATGTGCTCGATTTGGTTTGGAATGTATTATTTATATGGGTGCACAGGATATGGAAAGGCAGGCACTCAATGTTTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCAGTCCATGCTGGGACTGCTACACTTAAGGATGCTACATCAGAGGCTATAAGGGACTGGGTGACTAATGTTGAAACAACTCATTATATTTTGGGTTCTGTCGCCGGGCCGCATCCATATCCTATGATGGTAAGAGAGTTTCATGCTGTGATCGGCAAGGAAACCAGAAAGCAAGCTTTGGAAAAATGGGGAGGGAAGCCGGATGTTCTGATTGCATGCATCGGTGGAGGTTCAAATGCCATGGGACTTTTCCATGAATTTGTCGATGACAAAGATGTTAGGCTAATTGGTGTGGAGGCTGCTGGCTTCGGCCTAGACAGTGGCAAGCATGCTGCCACGTTAACGAAGGGAGAAATCGGGGTGTTGCATGGAGCTATGAGCTATCTGCTGCAGGATGATGATGGACAAATAGTTGAGCCTCACTCTATTAGTGCAGGCTTGGACTACCCTGGTGTTGGACCAGAACATAGCTTTTTGAAAGACCTAGGGCGTGCTGAATATCACAGCATCACTGACGAAGAAGCATTGGAAGCTTTTAAGAGAGTTTCGCGACTTGAAGGCATAATTCCAGCTTTGGAGACATCCCATGCATTGGCATATCTAGAGAAAGTTTGTCCCACCCTTCCTAATGGAACCAAGGTTGTGGTTAACTTCAGTGGCCGTGGTGATAAGGATGTTCAAACTGCTATCAAGTACTTGAAGCTTTGAAATGTTCCTGTGTTGATCAATGGTTTAGCTGCTGAAATGGGCTTCATTTTCATACTTAGAGACAGAATTTGTTCAATTGTTGAATGTTAAAATCATAAGTTATAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	310525	313848	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01696	trpB	EC:4.2.1.20	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0000162 tryptophan biosynthetic process

GO:0006568 tryptophan metabolic process

molecular_function
GO:0004834 tryptophan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003637.1	PF00291.20	PALP	149	460	3.60E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.273
SRR1783600	control	28.515
SRR1783602	moderate drought stress	16.837
SRR1811619	moderate drought stress	16.746

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.480
DRR006520	Root Summer glycyrrhizin high producing strain	25.334
DRR006521	Root Winter glycyrrhizin high producing strain	48.608
DRR006522	Root Winter glycyrrhizin high producing strain	46.975
DRR006523	Root Summer glycyrrhizin low producing strain	16.757
DRR006524	Root Summer glycyrrhizin low producing strain	16.751
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.103
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.790

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.195
SRR2868004	Drought Stress (root)	42.008
SRR2967015	Control (root)	40.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.978
SRR9715740	Leaf	30.191
SRR9715741	Leaf	25.021
SRR9715739	Root	15.258
SRR9715742	Root	12.489
SRR9715743	Root	14.548

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.726
SRR8749028	MeJA induced 9h	32.699
SRR8749029	MeJA induced 9h	28.444
SRR8749030	Uninduced	21.084
SRR8749031	Uninduced	12.802
SRR8749032	Uninduced	11.139

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.237
SRR8400027	Control - Root	50.937