Gene detail information of Glyur000029s00003634 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50900.1 | 4.00E-59 | Ankyrin repeat family protein |
| NR | AFK46964.1 | 7.84E-101 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8VY88|LTD_ARATH | 1.00E-74 | Protein LHCP TRANSLOCATION DEFECT (Precursor) |
| trEMBL | tr|I3T372|I3T372_LOTJA | 3.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:AFK46964.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 297924 | 299982 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.370 |
| SRR1783600 | control | 7.217 |
| SRR1783602 | moderate drought stress | 6.091 |
| SRR1811619 | moderate drought stress | 5.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.546 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.287 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.740 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.869 |
| SRR2868004 | Drought Stress (root) | 11.142 |
| SRR2967015 | Control (root) | 13.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 75.593 |
| SRR9715740 | Leaf | 112.095 |
| SRR9715741 | Leaf | 59.418 |
| SRR9715739 | Root | 4.455 |
| SRR9715742 | Root | 3.540 |
| SRR9715743 | Root | 4.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.631 |
| SRR8749028 | MeJA induced 9h | 3.435 |
| SRR8749029 | MeJA induced 9h | 2.934 |
| SRR8749030 | Uninduced | 1.050 |
| SRR8749031 | Uninduced | 0.310 |
| SRR8749032 | Uninduced | 1.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.902 |
| SRR8400027 | Control - Root | 18.005 |