Gene detail information of Glyur000029s00003627 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50890.1 | 3.00E-151 | ARM repeat superfamily protein |
| NR | XP_006602222.1 | 0 | PREDICTED: microtubule-associated protein TORTIFOLIA1-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9T041|MAPT_ARATH | 0 | Microtubule-associated protein TORTIFOLIA1 |
| trEMBL | tr|K7MR13|K7MR13_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G11930.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 272683 | 277196 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.406 |
| SRR1783600 | control | 9.203 |
| SRR1783602 | moderate drought stress | 4.454 |
| SRR1811619 | moderate drought stress | 4.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.339 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.360 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.971 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.863 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.177 |
| SRR2868004 | Drought Stress (root) | 7.879 |
| SRR2967015 | Control (root) | 7.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.952 |
| SRR9715740 | Leaf | 0.860 |
| SRR9715741 | Leaf | 1.030 |
| SRR9715739 | Root | 1.765 |
| SRR9715742 | Root | 4.236 |
| SRR9715743 | Root | 3.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.310 |
| SRR8749028 | MeJA induced 9h | 7.388 |
| SRR8749029 | MeJA induced 9h | 2.602 |
| SRR8749030 | Uninduced | 0.541 |
| SRR8749031 | Uninduced | 0.139 |
| SRR8749032 | Uninduced | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.931 |
| SRR8400027 | Control - Root | 13.658 |