Gene detail

Gene detail information of Glyur000029s00003617.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G27070.1	tryptophan synthase beta-subunit 2
NR	XP_003600046.1	Tryptophan synthase beta chain [Medicago truncatula]
COG	YP_007108541.1	tryptophan synthase subunit beta [Geitlerinema sp. PCC 7407]
Swissprot	tr\|O50046\|TRPB_CAMAC	Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBL	tr\|G7IXJ6\|G7IXJ6_MEDTR	Tryptophan synthase beta type 2 {ECO:0000313\|EMBL:AES70297.1}

Sequence

Transcript Sequence

>Glyur000029s00003617.1
TTGCCCCTTTTCTTCTTCACCTTCATCCATTCATTCATTCTCAGCCTCAGGAGCACTGTTCTTCCAATGGAGGGCCGCAACGACCACCACACCGGTTCGGTCCTATCTCAGCGACCCGATTCGTTTGGTCGGTTCGGCCGGTTCGGCGGCAAGTATGTCCCCGAGACTCTCATTCATGCACTCACCCAGCTAGAGGCGGCATTCCATTCCCTTGCTTCGGATGAAGACTTTCAGAGAGAGCTTGATGGGGTTCTGAGGGACTATGTGGGTAGGGAGAGCCCCCTTTACTTTGCCGAGAGGCTGACAGAACACTACAAGCGTGGTAACGACGGTGAGGGGCCTCAGGTGTATCTCAAGAGGGAGGATCTCAACCACACTGGTGCTCACAANATCAACAATGCTGTTGCTCAGGCTTTGCTTGCCAAGAGGTTGGGGAAGAAGAGGGTTATTGCTGAGACTGGTGCTGGCCAGCATGGGGTTGCCACCGCCACCGTGTGTGCCCGGTTCGGGTTGGAATGTGTTGTTTATATGGGTGCTAAGGATATGGAAAGACAGGCCCTTAATGTGTTCAGAATGCGCCTTCTTGGTGCTGAGGTGAGAGCCGTACATTCAGGAACAGCTACGCTGAAAGATGCTACATCAGAAGCTATAAGGGATTGGGTGACTAATGTGGAGACAACNCATTACATCTTGGGTTCTGTTGCTGGTCCACATCCATATCCTATGNTGGTAAGAGAGTTTCAAGCAGTGATTGGGAAAGAAACAAGAAAACAAGCATTGGAAAAGTGGGGAGGGAAGCCAGNTGTTCTGGTAGCATGTGTTGGTGGTGGCTCAAATGCCATGGGGCTTTTCCATGAATTCATTGATGACAAAGATGTTAGGTTGATTGGAGTGGAGGCTGCAGGGTTGGGCCTAGAAAGTGGTAAGCATGCTGCTACATTAACAAAAGGAGAAATTGGGGTTTTGCATGGAGCTATGAGCTATCTTTTGCAGGATGATGATGGGCAAATNATCGAGCCTCACTCTATCAGTGCAGGGTTGGACTACCCTGGGGTTGGACCAGAGCATAGTTTCTTGAAAGACGCAGGGCGTGCTGAATACTACAGTGTTACCGATGAAGAAGCACTGGAAGCTTTTAAGAGAGTATCCCAGCTAGAAGGCATAATTCCAGCTTTGGAGACATCTCATGCTCTGGCTTATTTAGAGAAGCTCTGCCCTACCCTTCCAAATGGAACCAAGGTTGTGGTTAACTGCAGTGGCAGAGGGGATAAGGACGTTCAAACTGCTCTCAAGTACTTAAAAGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	200246	202696	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01696	trpB	EC:4.2.1.20	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0000162 tryptophan biosynthetic process

GO:0006568 tryptophan metabolic process

molecular_function
GO:0004834 tryptophan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003617.1	PF00291.20	PALP	105	418	2.60E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.242
SRR1783600	control	5.255
SRR1783602	moderate drought stress	4.241
SRR1811619	moderate drought stress	4.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.834
DRR006520	Root Summer glycyrrhizin high producing strain	9.478
DRR006521	Root Winter glycyrrhizin high producing strain	6.286
DRR006522	Root Winter glycyrrhizin high producing strain	5.962
DRR006523	Root Summer glycyrrhizin low producing strain	4.574
DRR006524	Root Summer glycyrrhizin low producing strain	4.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.643
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.264

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.776
SRR2868004	Drought Stress (root)	8.981
SRR2967015	Control (root)	10.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.629
SRR9715740	Leaf	7.203
SRR9715741	Leaf	6.498
SRR9715739	Root	6.118
SRR9715742	Root	6.932
SRR9715743	Root	7.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.427
SRR8749028	MeJA induced 9h	11.270
SRR8749029	MeJA induced 9h	7.084
SRR8749030	Uninduced	4.955
SRR8749031	Uninduced	2.426
SRR8749032	Uninduced	2.808

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.559
SRR8400027	Control - Root	14.411