Gene detail

Gene detail information of Glyur000029s00003616

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54860.1	4.00E-164	Major facilitator superfamily protein
NR	XP_003532118.1	0	PREDICTED: probable folate-biopterin transporter 4-like [Glycine max]
COG	YP_007081215.1	2.00E-60	folate/biopterin transporter [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q8RWQ5\|FBT4_ARATH	0	Probable folate-biopterin transporter 4
trEMBL	tr\|I1KY57\|I1KY57_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G42640.1}

Sequence

Transcript Sequence

>Glyur000029s00003616.1
ATGATCGAATGGACGAAGCAGTTGAATGCTGCATTTGGGGTCTCGTTTCTTTGGCTGATTTGCTTGATATACTTCACCCAGGGTTTTAGGTCTTTTGTCTGGACAGCAATTTCCTACCAGCTTAAAGATAACCTTAATTTGTCACCCTCAGCTTCCCAATTCGTGTTTTCAGTAGCATTTTTCCCATGGAGCATTAAACCATTATATGGAATACTTTCTGATTGTATACCAATTAAAGGAAGAAAACGGATTCCCTACTTGGTGATTGCTACAGTTCTCTCCCTTGTGCCATGGTTTATTTTAGGCTTAAGTTCAACCATGAGGGATTCAACATGGCACCTGATGGTATTCTTGACTGTGCAAAACTTGGGCTCAGCCATGGCAGATGTTGTTGTTGATGCAATGATAGCTGAGGCAGTACGATATGACAGGGCCTCATATGCAGGAGACCTCCAGTCATTATCTTGGTCTGCAATGGCTTTGGGAGGAATATGTGGGAGTTTGTTAGGGGGATTTGCATTATCCAGTTTACGGATAGATGCTATTTTTCTTCTATTTTCTGTGCTACCGTGCATACAATTATTATCATGTTGTTTTGTGAAGGAGAACTCTGTAAATAGNAAAGTTTTAGCAGAGGATTCTATTGCAAGGGATTCACGTACAGATGGTGGTGGTAGTAGTAGTAGTAGTAGTATAGATGAAGATGGTCTTTTAACCAAAAAGTCCCGCAGCAGTACAAGAAGAAGAAAGAAGGGCAAAAAGAACACGAAAAATAGAGCAGTAAATACCAGCAGATCGAAGATTCTTGAGAAAGGAGACTCCTTGGCATTAAAGTGGTTCCATTCTTTGAAAGAAGCAATTTATGATTTGTGTCGTGCATTTAGACAACCAATGATTTTGAGTAATAATCTTTTGTTTTATGTTGTTGAGGTCAGACCTATGGCTTGGTTTTTCCTTGCCCACATTACCGTTCCCAATCTTTCAACAGTCATCTTCTACTACCAAACAGAGGTTCTGAAGCTGGAAGCATCTTTCCTGGGGACTGCACGGGTTGTTGGGTGGTTAGGACTTATGCTGGGCACCTTCATTTATAACCGTCACCTGAAGTATATGACCCTGAGAAGAATTCTCATGTGTGCCCACATTGGGTTAGCTTTCTTGAATCTTCTGCAGATTGTTGTAGTGTCTAGGAAAAACATTGCCTTTGGAGTATCAGACAGGATTATGGTGCTCTTTGGCTCAGCTCTTGCTGATGGAATCAATCAATTCAAGTTTATGCCTTTCCTGATCTTATCTGGACAACTATGTCCTCCAGGAATTGAAGGGACTTTGTTTGCCCTTTTCATGTCAATAAACAATTTGGGATCAACAGTGGGGTCTTTTGTGGGTGCTGGCTTGGCTTCTGCNTTGGACATCGATTCGGGATCTTTTGACAACCTTCTCTTGGGCATCATCATTCATGCTTTGTGCAATTTCATTCCAGTTGCTTTTCTGTTTCTGATACCAAAGGAAGCAACAGGTTTATCAGCATAGATCACGAGTTATATGAATGACTACCACTGAGATTGGCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	195147	199158	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003616.1	PF03092.11	BT1	27	505	8.50E-89
Glyur000029s00003616.2	PF03092.11	BT1	27	494	1.60E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.679
SRR1783600	control	0.738
SRR1783602	moderate drought stress	0.566
SRR1811619	moderate drought stress	0.558

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.143
DRR006520	Root Summer glycyrrhizin high producing strain	2.062
DRR006521	Root Winter glycyrrhizin high producing strain	0.913
DRR006522	Root Winter glycyrrhizin high producing strain	0.818
DRR006523	Root Summer glycyrrhizin low producing strain	1.059
DRR006524	Root Summer glycyrrhizin low producing strain	1.288
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.218
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.164
SRR2868004	Drought Stress (root)	5.435
SRR2967015	Control (root)	6.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.568
SRR9715740	Leaf	3.558
SRR9715741	Leaf	7.646
SRR9715739	Root	0.947
SRR9715742	Root	1.016
SRR9715743	Root	1.517

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.135
SRR8749028	MeJA induced 9h	6.737
SRR8749029	MeJA induced 9h	2.277
SRR8749030	Uninduced	11.785
SRR8749031	Uninduced	20.842
SRR8749032	Uninduced	12.258

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.555
SRR8400027	Control - Root	5.228