Gene detail

Gene detail information of Glyur000029s00003615

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27040.4	9.00E-125	EAP30/Vps36 family protein
NR	XP_003600054.1	1.94E-177	Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
Swissprot	tr\|Q5M759\|VP221_ARATH	1.00E-161	Vacuolar protein sorting-associated protein 22 homolog 1
trEMBL	tr\|G7IXK4\|G7IXK4_MEDTR	7.00E-178	Vacuolar sorting protein SNF8 {ECO:0000313\|EMBL:AES70305.1}

Sequence

Transcript Sequence

>Glyur000029s00003615.1
AGCCAACAAAATCCCCAGAGTTCCCAAAATCCAACGATAATAATAGTGTCTTCCTTTTTCTCGTTCTCATTCTGCTTTGCACTCCATCNCTCGTTCTTCGACGGTGGTGATTAATCGGAAGAGAAAGGACGTCAAATGAAGAAGCTGTGGTGTTTGAAGTTGAACTGATCTTAATTGAAACACACAAGGGGTTTTGGGAATTCACNTATCACGAGTTTGAATTTTAAATTCCCAGTTTTGTGTTGAAAATCAAAAATAACAAAATACTATTGCTTTTCAAAATCCATTTTGTTTAATATCCAAAAAAGAAGTTTTTTTAAGGAAAAACTGATCTTAAATCAGTTTGATTCCCCTCAACAAATACACTGTTTTTTTTTTTTGGAATTTTGAGTAACTAAGCCACTACCCAGAAAACCAAATTTGCAAAATCTATAATTGGAATAAGGGATTTGGGGAAGGCAAAATGAGAAGGAGACCTGGAATTGGAGGATTGCAGACAGCTGCTGCTGCAAGGGATCAATATCGGTTGCTGGGTGAGAATGTAGCAAAGATCAGAACCGATATGATGAAGGAGCAGCTTGCTACGTTTCGCTCTCAGCTTGAAGATTTTGCTCGNAAGCATAAGAATGACATCCGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCAAATAAGGGTTTCTGGGCAGAGCTGTTGGGAATTGGTGACTTCTATTATGAGCTCGGAGTTCAAATAGTGGACATTTGCTTGGCCACTAGACCCCACAATGGAGGACTGATCAACCTGCAGGAACTCTGTCATCTCCTTCGTCAGAGACGAAAAAGTGATCGTGGAGTTGTTTCTGAGGATGATTGCTTGCGTGCTATCAGCAAGCTGAAGGTGCTGGGTAGTGGGTTTGAGGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACCGAGTTGAACAAAGACCACAATGAAATTCTAGAACTTGCCCAGGCTCAAGGATTCGTGACTGTAGATGAAGTAGAAAGGCGACTATCNTGGACTTCGGGACGTGCCATTGACGCGCTTGATACGTTACTTGATGAGGGACTTGCAATGATTGATGATGGCCATAGAGACGGTAAACGACGGTACTGGTTTCCGTGTGTATCTCCCATCTCGTCTTCTTCAGGAATCGATTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	190803	193883	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003615.1	PF04157.11	EAP30	6	224	4.20E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.206
SRR1783600	control	7.202
SRR1783602	moderate drought stress	8.098
SRR1811619	moderate drought stress	7.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.961
DRR006520	Root Summer glycyrrhizin high producing strain	13.733
DRR006521	Root Winter glycyrrhizin high producing strain	16.219
DRR006522	Root Winter glycyrrhizin high producing strain	15.341
DRR006523	Root Summer glycyrrhizin low producing strain	14.837
DRR006524	Root Summer glycyrrhizin low producing strain	14.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.415
SRR2868004	Drought Stress (root)	22.352
SRR2967015	Control (root)	22.337

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.281
SRR9715740	Leaf	16.095
SRR9715741	Leaf	16.472
SRR9715739	Root	7.773
SRR9715742	Root	8.184
SRR9715743	Root	9.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.749
SRR8749028	MeJA induced 9h	7.035
SRR8749029	MeJA induced 9h	5.346
SRR8749030	Uninduced	7.395
SRR8749031	Uninduced	3.969
SRR8749032	Uninduced	3.952

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.825
SRR8400027	Control - Root	19.519