Gene detail information of Glyur000029s00003613 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27030.1 | 1.00E-110 | fatty acid desaturase A |
| NR | KHN19819.1 | 0 | Transmembrane protein 189 [Glycine soja] |
| COG | YP_633887.1 | 5.00E-16 | carotenoid synthesis regulator CarF [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q9SZ42|FAD4_ARATH | 4.00E-139 | Fatty acid desaturase 4, chloroplastic (Precursor) |
| trEMBL | tr|I1N0R4|I1N0R4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G11620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 188550 | 189485 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003613.1 | PF10520.4 | Kua-UEV1_localn | 123 | 291 | 1.30E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.078 |
| SRR1783600 | control | 0.079 |
| SRR1783602 | moderate drought stress | 0.151 |
| SRR1811619 | moderate drought stress | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.348 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.333 |
| SRR2868004 | Drought Stress (root) | 2.425 |
| SRR2967015 | Control (root) | 1.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.588 |
| SRR9715740 | Leaf | 119.338 |
| SRR9715741 | Leaf | 73.819 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.651 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.130 |
| SRR8749028 | MeJA induced 9h | 1.024 |
| SRR8749029 | MeJA induced 9h | 0.584 |
| SRR8749030 | Uninduced | 1.030 |
| SRR8749031 | Uninduced | 0.388 |
| SRR8749032 | Uninduced | 1.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.171 |
| SRR8400027 | Control - Root | 0.733 |