Gene detail

Gene detail information of Glyur000029s00003612

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36110.1	6.00E-85	cytochrome P450, family 716, subfamily A, polypeptide 1
NR	XP_007141897.1	0	hypothetical protein PHAVU_008G235000g [Phaseolus vulgaris]
COG	YP_007117231.1	4.00E-76	(+)-abscisic acid 8'-hydroxylase [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q8W4T9\|T13H_TAXCU	2.00E-124	Taxane 13-alpha-hydroxylase
trEMBL	tr\|V7BBP1\|V7BBP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13891.1}

Sequence

Transcript Sequence

>Glyur000029s00003612.1
GGTGTGAGTCCATGTTAAAACCTGAGAACTAGATCTCACCCCATATCCTTTGTCTTCTTCAGAACCAAAAGGCAGGTGCTGAACCATGAACTTTTTCTTTGCTAGTTTCCTCTTCCTCATCCCAATTCTCCTTCTGCTAAGGAGAATATCAAGATCATCATCACCATCATCCAAAAGGGTCCCTCCAGGTTCTCTTGGAGTACCCTTTATTGGTCAAAGCCTTAACTTTCTTCGAGCCCTGCGTGCCAACACTGCAGAAAAGTGGATGGAAGATAGAGCCAGCAAGTATGGTCCAGTTTCAAAGCTAAGCCTCTTTGGAAAACCAACAGTGTTCATCTGTGGAAAGGATGCAAATAAGTTTATATTCACCAACGATGGTAGCACTATTGCTTACCAGCAACCTCAGTCCTTTCAAATGATCTTGGGGACCCGCAACTTGCTGGAAGTGAATGGCCAAGATCACAAGCGGATCAGAAGTGCACTTGTCAGGTTCTTGAAGCCAGAGTGTTTGAAGCAATATGTGGGGAAAATAGATGAACAAGTTAAGAAAAACATTGAGATGCATTGGCAAGGGAAACATCATGTCAAGGTGTTGCCCTTGATGAAGACACTCACATTCAACATAATTAGTTCTCTTCTGTTTGGTCTTGAGCAAGGAAGCTTAAAAGATCAATTCCTGGCTTCCTTCCAAGTGATGATAGAAGGACTGTGGTCAGTTGCTATTAATGTGCCCTTCACAAGCTACAGCCGCAGCCTCAGAGAAAGTGCAAGGATGCAGGAGATGTTGAAGAAGGTTATACACAAGAAGAAGACTGAACTTGAGCAAAATGAGGGTTCTTCTGACCAAGACTTGATCACATGCTTGCTTTCCATGCTTGATGAAAATGGAAAACAGTTGATCACTGAGAAGGAAATCATAGAAAATTCTATGCTGGTCATGGCTGCTGGACATGAAACTTCATCTACTCTAATTACTTTCATCATCCGAGCCTTAGCTAATGATTCAACTGTTTATGAAGCAGTTCTTCAAGAACAAGAAGAGATAGCAAAAAGCAAGTCCTCAGGAGAGTCTCTGACATGGGAAGACCTTGCCAAGATGAAGTATACATGGAGGGTAGCAATGGAAACTCTTAGGATGTTTCCTCCTGTCTTTGGTGGCTTCAGAAAGGCTTTGACAGATATTGAATATGGTGGATACCTTATACCAAAAGGGTGGCAAATCTTCTGGGTTACAGCTATGACTCACATGGACAAGAGCCTATTTCCAGAACCATCAAAATTTGAGCCAAGTAGATTTGAAAACCAAGCAGCATCTACTACCCTACCCTACTGCTTCATCCCATTTGGTGCAGGAGCAAGGATATGTCCAGGGTATGACCTTGCTAGGATTGAAACTCTTGTGGCAATCCATTATCTGGTAACCAGGTTTACTTGGAAGCTATGTGCTGACAATGGATTCAGAAGGAATCCAGCTTTAGAACCCACTCAAGGGCTACCTATTCAAATTTGGCCAAGGGAACTTTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	180452	183074	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP718

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003612.1	PF00067.17	p450	33	459	2.20E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.787
SRR1783600	control	0.718
SRR1783602	moderate drought stress	0.853
SRR1811619	moderate drought stress	0.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.742
DRR006520	Root Summer glycyrrhizin high producing strain	0.798
DRR006521	Root Winter glycyrrhizin high producing strain	24.781
DRR006522	Root Winter glycyrrhizin high producing strain	24.480
DRR006523	Root Summer glycyrrhizin low producing strain	22.455
DRR006524	Root Summer glycyrrhizin low producing strain	22.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.723

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.719
SRR2868004	Drought Stress (root)	6.616
SRR2967015	Control (root)	13.127

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.166
SRR9715740	Leaf	0.078
SRR9715741	Leaf	0.121
SRR9715739	Root	1.593
SRR9715742	Root	5.088
SRR9715743	Root	4.499

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.799
SRR8749028	MeJA induced 9h	9.197
SRR8749029	MeJA induced 9h	5.576
SRR8749030	Uninduced	77.027
SRR8749031	Uninduced	96.514
SRR8749032	Uninduced	51.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.662
SRR8400027	Control - Root	5.202