Gene detail

Gene detail information of Glyur000029s00003610

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20500.1	1.00E-58	purple acid phosphatase 18
NR	XP_002883248.1	6.35E-129	ATPAP18/PAP18 [Arabidopsis lyrata subsp. lyrata]
COG	YP_004902613.1	2.00E-06	putative phosphodiesterase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q9LJU7\|PPA18_ARATH	4.00E-69	Purple acid phosphatase 18 (Precursor)
trEMBL	tr\|D7LB06\|D7LB06_ARALL	2.00E-129	Purple acid phosphatase {ECO:0000256\|RuleBase:RU361203}

Sequence

Transcript Sequence

>Glyur000029s00003610.1
ATGTTATATAGCTCAGGAAAGATCCACCACACTGTAATTGGGCCTTTAGAGCATAATTCTGTGTACTTTTACAGATGTGGTGGACAAGGTCCTGAGTTCCAGCTCAAAACTCCTCCACCTCAATTTCCAATCACTTTTGCTGTGGCTGGGGATCTTGGCCAAACTGGTTGGACTAAATCAACATTGAATCACATTGACCAATGTAAGTATGATGTTCAGCTGCTGCCAGGAGACCTTTCTTATGCCGATTATATCCAGCATCGGTGGGACACGTTCGGTAGGCTTGTGCAGCCACTTGCGAGTGCAAGGCCATGGATGGTAACACAAGGGAACCATGAAGTGGAGAACATACCCTTTAACACGGCTCATCAAGGAGAAGGGGGTGATATGATGGAAACCATGGAGCCATTGCTTTATGCTGCTAGTGTTGATTTAGTCTTTTTTTTTCATGTGCACGCATATGAACGCTCGAAACGTGTGTATAATGGAAGATTGGATCCTTGTGGTTTTTTTTATATAACCATTGGTGATGGAGGGAACAAAGAAGGCTTAGCTCCTAAGTATATAAATCCACAGCCAAAGTGGTCAGAATTCCGTGAAGCCAGTTTTGGTCACGGTGAGCTTAAGATTGTAAACTCCACACATGCCTTCTGGAGTTGGCATTTTTTTTACAACGATGAGCCAGTGAAATCTGATGATATCTGGATAACCTCTCTGGTCAGCTCAGGATGTGTTGATCAGAAGAGAAGTCAACTCAAGCATAAACTTTTTTTTCCCTAAAAATCCCCTGATCTTCTTCTGTCTTTCCTCAACAATGGATTAGCAAGAGTTTGGTTGTGTATGCAAATCATGAAACAATTCCTCATATTATTTTTTTTCACTAATAGCAGCTTGAGTAAGGTGGCCTTATGTCCTTGAAGTGAGATTATTGAGGTATATAGCACTAGTGTGTTTCTATATTAAGTACCTTGTCTCTACATTAAGGCTGGTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	175511	177762	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003993 acid phosphatase activity

GO:0016787 hydrolase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003610.1	PF00149.23	Metallophos	45	126	0.00012
Glyur000029s00003610.1	PF14008.1	Metallophos_C	171	221	1.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.425
SRR1783600	control	56.903
SRR1783602	moderate drought stress	47.511
SRR1811619	moderate drought stress	47.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.684
DRR006520	Root Summer glycyrrhizin high producing strain	35.822
DRR006521	Root Winter glycyrrhizin high producing strain	3.653
DRR006522	Root Winter glycyrrhizin high producing strain	4.116
DRR006523	Root Summer glycyrrhizin low producing strain	41.680
DRR006524	Root Summer glycyrrhizin low producing strain	41.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.245

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.186
SRR2868004	Drought Stress (root)	21.424
SRR2967015	Control (root)	25.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.746
SRR9715740	Leaf	1.628
SRR9715741	Leaf	2.098
SRR9715739	Root	26.300
SRR9715742	Root	28.296
SRR9715743	Root	30.691

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.816
SRR8749028	MeJA induced 9h	9.450
SRR8749029	MeJA induced 9h	6.035
SRR8749030	Uninduced	1.251
SRR8749031	Uninduced	0.359
SRR8749032	Uninduced	1.921

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.649
SRR8400027	Control - Root	34.832