Gene detail

Gene detail information of Glyur000029s00003603

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G36210.1	alpha/beta-Hydrolases superfamily protein
NR	XP_004500058.1	PREDICTED: uncharacterized protein LOC101508559 isoform X3 [Cicer arietinum]
COG	YP_007080822.1	dipeptidyl aminopeptidase/acylaminoacyl peptidase [Pleurocapsa sp. PCC 7327]
trEMBL	tr\|G7IXL5\|G7IXL5_MEDTR	Acyl-peptide hydrolase-like protein {ECO:0000313\|EMBL:AES70316.1}

Sequence

Transcript Sequence

>Glyur000029s00003603.1
ATGGCCACGTNACTCACTCTCACTCGTTCTTCTTTCCCATCTCGTTATTCCAAGCACTTCTTCACTCACAGATTCAACCATTTCAGCAGCACAGGGCTTATTCTCTCATCCAAAAGGACCAAAACACTGCATCAACGACACCGTTTCTGCTACACAAAGGTAATGGCTTCTTCAACAGCCACCTCTGGTTCTGATAGAATCACTGCCCCCTATGGCACTTGGAAGTCACCCATCACCGCCGATGTCGTCTCCGGCGCCTGCAAGAGGCTCGGCGGCACCGCCGTCGATGGCCGTGGCCGCCTCGTTTGGCTGGAATCACGTCCAGCAGAATCAGGAACACTGGCACAGGAGTATGGAGGTGGTGCTTTCACTGTTTCAGGAGATGTTGTCTTCTTTGCAAATTACAAGGATCAGAGATTGTACAAACAATCCATCACTTCTCTGGATATGCCTCCTACACCTCTCACTCCGGATTATGGTGGACCGGATGCAAGCTATGCCNATGGAGTATTGGATACACGCTTTAACCGTTTTATATGTGTAANGGAAGATCGTCGGGAGAGCAGTCAAAATCCACCTACAACAGTTGTATCTATAGCACTTGGCAGCAGGGATGTTCAGGAACCAGAAGTACTAGTTGGCGGGAGTGATTTCTATGCTTTCCCACGTCTAGACCATAAAAGTGAAAGAATAGCATGGATACAGTGGAGTCACCCCAACATGCCGTGGGATAAATCAGAACTTTGGGTTGGCTATATTTCTGAAAATGGAGAGATCTACAAGCGTGTCTGTGTTGCTGGATATAATCCTACACCTGTGGAGTCTCCAACTGAGCCGAAGTGGTCCCCTGATGGGGAGCTTTTTTTCATCACGGATAAGGAAAATGGTTTCTGGAATCTCCATAAATGGATTGAGTCAGAAAATAAGGTTGTGCCTGTTTATTCTTTGGATGCTGAGTTTGCAAAGCCACTATGGATTTTTGGCATGAATTCTTATGAATTTGTTCAGAGTCATAAACAGAGAAACTTAATTGCTTGCAGTTACAGGCAGAAGGGGAAGTCATATCTTGGAATTATTGATGATNTGCAGGGCTCAAAACTAACTGTGCTTGATATCCCTTTCACAGATATAGATAACATTACTTCTGGCAATGATTGCCTATTTGTGGAAGGAGCGTCTGCAGTTCATCCATCATCAGTGGCCAAGGTGACCTTAGATGACGATAAATCAAAAACAATTGACTTCAATATTATTTGGTCNTCCTCACCAGATAGTTTAAAGTATAGTTCGTACATCAGTAAGCCAGAGTTGATTGAATTCCCAACTGAAGTACCTGGACAAAAGGCTTATGCATACTTTTATCCGCCATCTAATCCTATTTACCAAGCCAGTCAAGGAGAGAAGCCTCCATTGTTATTGAAGAGCCACGGAGGGCCAACCGCTGAAGCACGTGGAATTTTAAATTTGAGCATTCAGTACTGGACTAGTCGGGGTTGGGCATTCGTTGATGTTAATTACGGTGGAAGCACTGGTTATGGCAGGGAGTTCCGAGAACGGCTTTTAGGACGCTGGGGAGTAGTGGATGTCAATGACTGCTGTAGTTGTGCTACATATTTGGTGGGCAGTGGAAAAGTAGATGGGGAGCGACTGTGTATAACAGGGGGATCTGCTGGTGGGTATACCACATTAGCCGCGCTTGCTTTTAGAGAAACCTTCAAGGCCGGGGCTTCTTTGTATGGTGTAGCCGACTTGAAATTGTTGGTAGAAGAAACTCATAAATTTGAATCTCACTACATTTCTAACCTAGTTGGAGGTGAGAAGGAGTGCTTTGAAAGATCCCCAATCAATCATGTTGATAAGTTTTCTTGTCCTATCATTCTATTTCAAGGATTGGAGGACAAGGTTGTGCCACCCAGTCAAGCACGCAAAATTTACCAGGCTCTGAAGGAAAAAGGCNTGCCGGTTGCTCTCGTCGAGTATGAAGGAGAGCAACACGGTTTCCGAAAGGCTGAGAACATTAAGTTTACACTTGAACAACAAATGGTCTTCTTTGCGCGATTGATAGGGNGCTTCAACGTTGCCGATCCTATTACTCCCATCAAAATTGACAACTTCGATTGAGAATGGCTTTTTCAGAGAAATTCATGAAGTTCTTTCTGCTAGAAGTTAATTGCACTGATGAGGGTCTCCTGCGGGGGCACTAACCAACCTACCCCCATAGCCGTAGTAGCACTCTGTAGAAGGTCTTTGTTCATTCTCATTGCCNAGAGTGTGCAGAGTTTCTACTACATTTCTCAAATCTTGATTGGAGNTCAATATATTCAGTCTTGAATTTTGTTTAGAATTATGGTTTTTATATTTTGAACCTGCACTACAAATATAGCATGTTTGTTTTCTAGAATATCAGTCCTGCATATNTAAAGTGAGTATTGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	130652	137007	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003603.1	PF00326.16	Peptidase_S9	490	689	2.20E-44
Glyur000029s00003603.2	PF00326.16	Peptidase_S9	515	714	2.30E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.150
SRR1783600	control	27.475
SRR1783602	moderate drought stress	29.524
SRR1811619	moderate drought stress	29.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.930
DRR006520	Root Summer glycyrrhizin high producing strain	30.408
DRR006521	Root Winter glycyrrhizin high producing strain	60.020
DRR006522	Root Winter glycyrrhizin high producing strain	58.878
DRR006523	Root Summer glycyrrhizin low producing strain	32.630
DRR006524	Root Summer glycyrrhizin low producing strain	32.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.211
SRR2868004	Drought Stress (root)	25.767
SRR2967015	Control (root)	25.608

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.498
SRR9715740	Leaf	38.714
SRR9715741	Leaf	13.572
SRR9715739	Root	26.659
SRR9715742	Root	41.151
SRR9715743	Root	37.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.539
SRR8749028	MeJA induced 9h	25.764
SRR8749029	MeJA induced 9h	22.602
SRR8749030	Uninduced	5.122
SRR8749031	Uninduced	1.557
SRR8749032	Uninduced	4.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.289
SRR8400027	Control - Root	23.009