Gene detail information of Glyur000029s00003602 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53840.1 | 3.00E-26 | pectin methylesterase 1 |
| NR | XP_007138198.1 | 1.55E-78 | hypothetical protein PHAVU_009G188700g [Phaseolus vulgaris] |
| Swissprot | tr|Q43867|PME1_ARATH | 1.00E-28 | Pectinesterase 1 (Precursor) |
| trEMBL | tr|V7AX27|V7AX27_PHAVU | 6.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:ESW10192.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 125514 | 129555 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003602.1 | PF04043.10 | PMEI | 105 | 253 | 2.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.149 |
| SRR1783600 | control | 5.300 |
| SRR1783602 | moderate drought stress | 5.954 |
| SRR1811619 | moderate drought stress | 4.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.151 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.861 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.615 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.349 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.191 |
| SRR2868004 | Drought Stress (root) | 0.694 |
| SRR2967015 | Control (root) | 0.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.279 |
| SRR9715740 | Leaf | 0.331 |
| SRR9715741 | Leaf | 0.059 |
| SRR9715739 | Root | 0.776 |
| SRR9715742 | Root | 0.158 |
| SRR9715743 | Root | 0.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.454 |
| SRR8749028 | MeJA induced 9h | 1.252 |
| SRR8749029 | MeJA induced 9h | 1.033 |
| SRR8749030 | Uninduced | 0.262 |
| SRR8749031 | Uninduced | 0.920 |
| SRR8749032 | Uninduced | 7.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.545 |
| SRR8400027 | Control - Root | 0.733 |