Gene detail

Gene detail information of Glyur000029s00003600

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25130.1	2.00E-93	peptide met sulfoxide reductase 4
NR	XP_006595593.1	1.26E-155	PREDICTED: uncharacterized protein LOC100804748 isoform X1 [Glycine max]
COG	YP_007203399.1	8.00E-59	methionine-S-sulfoxide reductase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9SEC2\|MSRA_LACSA	9.00E-119	Peptide methionine sulfoxide reductase
trEMBL	tr\|I1M6R8\|I1M6R8_SOYBN	5.00E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02705.1}

Sequence

Transcript Sequence

>Glyur000029s00003600.1
GCCACCAACAACGAAGAAACAACCGTCGCAACACAACACAACGAGAGACAAAGTGAGATTAAGGATCAACGAAGCGTCATCATTCGCCAACAGCACACGACCCTTTGTTTTATTTTGCTGTCTGTCACTTTTCTTCTTCCTCCTTCTTCTTTGTTTTCATCTTCTTTCCCACTCTTCAATCACCATTCAGTTATTCCCATTTCTCGCTTCCACTTGCACGAAGCAGCAGCATCACTACCGGGTTCAGTTCTGGTGTTCCTTTCTTCTTCTCTCTCTAGTCCTTCAAAAACGAAGTTCCTTCCAATTCCACCACTTTCTAGATTTTCTGTCAAGTGTTGTTGCTTCTCCTCCAAAGCTCATCCACATATTGCTATCAACAAGCACTCCATGTACTTGCTGAACAGACTCGGGCTTGGTAGCCCAAGGGCAACAGAGAATATGGGTTCATCCATTGCTCAAGGACCAGATGATGACACACCAGCACCGGGTCAACAGTTTGCCCAGTTTGGTGCTGGCTGTTTTTGGGGTGTCGAGCTGGCCTTCCAGAGGGTGTCTGGGGTGACCAAGACGGAGGTTGGTTATAGCCAGGGTCTTTTGCATAATCCAAGCTATGAGGATATATGTTCGGGGACCACAAACCACTCAGAGGTTGTCAGGGTCCAATATGATCCCAAAGAATGTAGCTATGAGACTTTGCTTGATGTGTTCTGGGCTAGACATGATCCTACCGCACTGAATCGTCAGGGGAATGATGTGGGAACACAATACAGGTCTGGAATATACTATTACACACCTGAACAAGAGAAAGCAGCCAGAGAGTCTCTAGAACAACAACAGAACAAGCTAAACAGGAAGATTGTTACTGAGATTCTTCCTGCCAAGAAGTTCTACAGGGCAGAAGAGTACCATCAACAGTACCTTGAGAAAGGTGGTCGATTTGGTTCCAAGCAATCTGCTTCTAAGGGATGCAATGATCCTATTCGATGCTATGGTTAAATTAATATGGGAATCACCACCAAGGGATCTAAATGACCAGTTTAGATGTTGAAAACGGATAGTTTTGTTTATAAGTATTTGTTAGTATATCAATAAAGCTAAGTCACACCCTACATAATGTTTTGTATTTTTAGGTTGAAGATCACCATAAAGTCAGTTCTAGACTTCTAATGTTAGTGTTTTATATGTATAGTTTTGTAATAAAGTGTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	108866	112289	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003600.1	PF01625.16	PMSR	167	310	5.60E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.843
SRR1783600	control	33.524
SRR1783602	moderate drought stress	65.524
SRR1811619	moderate drought stress	65.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.191
DRR006520	Root Summer glycyrrhizin high producing strain	50.824
DRR006521	Root Winter glycyrrhizin high producing strain	187.289
DRR006522	Root Winter glycyrrhizin high producing strain	183.749
DRR006523	Root Summer glycyrrhizin low producing strain	85.287
DRR006524	Root Summer glycyrrhizin low producing strain	85.115
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.719
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.405

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.976
SRR2868004	Drought Stress (root)	30.918
SRR2967015	Control (root)	37.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.278
SRR9715740	Leaf	34.211
SRR9715741	Leaf	41.180
SRR9715739	Root	16.596
SRR9715742	Root	41.054
SRR9715743	Root	34.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.123
SRR8749028	MeJA induced 9h	46.317
SRR8749029	MeJA induced 9h	56.268
SRR8749030	Uninduced	44.397
SRR8749031	Uninduced	62.357
SRR8749032	Uninduced	79.468

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.467
SRR8400027	Control - Root	48.886