Gene detail information of Glyur000029s00003596 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21920.1 | 7.00E-05 | |
| NR | XP_003600081.1 | 2.43E-40 | hypothetical protein MTR_3g051530 [Medicago truncatula] |
| trEMBL | tr|G7IXN1|G7IXN1_MEDTR | 9.00E-41 | DUF4228 domain protein {ECO:0000313|EMBL:AES70332.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 99856 | 100164 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003596.1 | PF14009.1 | DUF4228 | 37 | 100 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.416 |
| SRR1783600 | control | 14.910 |
| SRR1783602 | moderate drought stress | 17.573 |
| SRR1811619 | moderate drought stress | 17.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.816 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.637 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.083 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.456 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.320 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.737 |
| SRR2868004 | Drought Stress (root) | 53.535 |
| SRR2967015 | Control (root) | 24.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.737 |
| SRR9715740 | Leaf | 14.548 |
| SRR9715741 | Leaf | 50.081 |
| SRR9715739 | Root | 11.245 |
| SRR9715742 | Root | 19.450 |
| SRR9715743 | Root | 20.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.215 |
| SRR8749028 | MeJA induced 9h | 1.334 |
| SRR8749029 | MeJA induced 9h | 1.687 |
| SRR8749030 | Uninduced | 18.652 |
| SRR8749031 | Uninduced | 18.641 |
| SRR8749032 | Uninduced | 5.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 50.837 |
| SRR8400027 | Control - Root | 50.395 |