Gene detail information of Glyur000029s00003593 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27010.1 | 0 | |
| NR | XP_004500064.1 | 0 | PREDICTED: uncharacterized protein LOC101510812 [Cicer arietinum] |
| trEMBL | tr|A0A072UXP5|A0A072UXP5_MEDTR | 0 | Ribosome 60S biogenesis amino-terminal protein {ECO:0000313|EMBL:KEH33828.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 79852 | 94420 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003593.1 | PF11707.3 | Npa1 | 73 | 372 | 1.80E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.388 |
| SRR1783600 | control | 3.468 |
| SRR1783602 | moderate drought stress | 7.200 |
| SRR1811619 | moderate drought stress | 7.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.117 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.322 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.965 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.007 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.236 |
| SRR2868004 | Drought Stress (root) | 8.870 |
| SRR2967015 | Control (root) | 7.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.547 |
| SRR9715740 | Leaf | 1.628 |
| SRR9715741 | Leaf | 1.585 |
| SRR9715739 | Root | 0.674 |
| SRR9715742 | Root | 5.537 |
| SRR9715743 | Root | 5.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.682 |
| SRR8749028 | MeJA induced 9h | 8.399 |
| SRR8749029 | MeJA induced 9h | 4.774 |
| SRR8749030 | Uninduced | 2.140 |
| SRR8749031 | Uninduced | 2.645 |
| SRR8749032 | Uninduced | 2.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.355 |
| SRR8400027 | Control - Root | 8.067 |