Gene detail

Gene detail information of Glyur000029s00003590.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20410.1	0	calmodulin-domain protein kinase 9
NR	KHN02836.1	0	Calcium-dependent protein kinase 9 [Glycine soja]
COG	YP_642814.1	1.00E-29	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|P53683\|CDPK2_ORYSJ	0	Calcium-dependent protein kinase isoform 2
trEMBL	tr\|I1N0P1\|I1N0P1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G11030.1}

Sequence

Transcript Sequence

>Glyur000029s00003590.2
TTTTTCTTTTTGTTTTTTCCTTTTTCCCCTTGCAAGCTTTTTGATTTTTGATTCTCAAATTGATTTCAATAATAGATTTCTGATCAAAAGCTCAAGTTAGTGTACTATGATCCTTGAATTCTCATCTGGGTTCAATCCTGTATCAGATTTTGACTGAATCATTCTCAAAAAGTGGTTTATTACTTTGTATCTGATATAAAAATCCCACCTTTCTTACTGTTTTCTTAGTCACAATACTTGGATTTGAGAAGCTGGAGACATGGGTAGCTGTCTAAGTTTAGGTAAAGACTCAGAACCAGAACACAATGGTTACAGACATGGTGGGCACAATCATAATAAGAGCCATGAGCCCTTGGTCAACCAATCAAGAGCACATGCTAATCAACCTTACCAGTCACATGCTGCATCCACTCAGATGGTGCCCCAGATACCATGGAAGCCTTCTTCTGTTCCTGTCCCAAGCCCAAAACCTGTTAAGCTAGATTCAAACACAATCCTTGGGAAGCAATTTGAGGATGTGAAGCAGTTCTATACATTTGGGAAGGAACTGGGTAGAGGGCAATTTGGGGTAACATATCTGTGCACTGAGAACTCAACTGGGTTGCTTTTTGCTTGCAAGTCAATCTCAAAGAGGAAACTTGTCAGCAAATCTGATAGGGAGGATATAAAGAGGGAGATTCAGATCATGCAGCATTTGAGTGGTCAACCAAACATTGTTGAGTTCAAAGGGGCTTACGAGGATAAGAATTCTGTTCATGTTGTGATGGAGCTGTGTGCTGGTGGTGAGCTTTTTGATAGGATAATTGCAAAGGGGCATTACAGTGAAAGGGCTGCTGCTTCAATATGCAGGCAGATTGTCAATGTTGTTCATATCTGTCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAAGGATGAAAATGCACTTCTCAAGGCAACAGATTTTGGCTTGTCGGTTTTCATTCAAGAAGGAAAGGTGTATCGGGATATAGTTGGGAGTGCTTATTATGTTGCGCCAGAAGTTCTACGGCGCAGATGCGGGAAGGAAATAGATATATGGAGTGCAGGAGTAATATTATATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCCGAGACGGAAAAGGGAATATTTGATGCCATATTGGAGGGTCATATTGATTTTGAAAGTCAACCATGGCCTAAAATATCAGACAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCGAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCATGGATTAAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTCTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCCCTGAAGGTCATTGCTAAGAATATGTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACCGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCGGGATTACATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTTAAGCAACTCATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTAGAAACAGCCATGAAAGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATTATATCTGAAGTTGATACAGTTATATCTGAAGTGGATACTGATCATGATGGTAGGATCAACTATGAAGAATTCTGTGCAATGATGAGGAGTGGAAACCAACAACAAGGCAAGCTATTCTAAATCACACAAGAACCCCCATAGGGAAAAAGGTTTATACTTGTGAGATGTACTTCCACAAGTTCCATATTCATAGGCATGTAAAGCTTCTGATTTAGAATGTTTTTTTCGAGTTACTCTTGTTTCATTTTTGGTTTCTTTTTGGACACTAAGTATAAACTATAAACTCATTTGGCAAAGTTGATAGCTCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	62755	67593	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003590.2	PF00069.20	Pkinase	91	349	5.60E-70
Glyur000029s00003590.2	PF13499.1	EF-hand_7	396	455	1.50E-12
Glyur000029s00003590.2	PF13499.1	EF-hand_7	468	534	5.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.299
SRR1783600	control	23.726
SRR1783602	moderate drought stress	21.480
SRR1811619	moderate drought stress	20.809

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.380
DRR006520	Root Summer glycyrrhizin high producing strain	61.507
DRR006521	Root Winter glycyrrhizin high producing strain	53.116
DRR006522	Root Winter glycyrrhizin high producing strain	51.285
DRR006523	Root Summer glycyrrhizin low producing strain	97.261
DRR006524	Root Summer glycyrrhizin low producing strain	96.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.548
SRR2868004	Drought Stress (root)	57.435
SRR2967015	Control (root)	42.119

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.430
SRR9715740	Leaf	24.470
SRR9715741	Leaf	33.794
SRR9715739	Root	8.687
SRR9715742	Root	54.854
SRR9715743	Root	45.645

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.729
SRR8749028	MeJA induced 9h	263.473
SRR8749029	MeJA induced 9h	160.092
SRR8749030	Uninduced	362.762
SRR8749031	Uninduced	172.436
SRR8749032	Uninduced	105.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.375
SRR8400027	Control - Root	46.296