Gene detail

Gene detail information of Glyur000028s00003574

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75620.1	0	glyoxal oxidase-related protein
NR	XP_007136064.1	0	hypothetical protein PHAVU_009G014800g [Phaseolus vulgaris]
COG	YP_001511421.1	2.00E-18	hypothetical protein Franean1_7196 [Frankia sp. EAN1pec]
trEMBL	tr\|V7ATX1\|V7ATX1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08058.1}

Sequence

Transcript Sequence

>Glyur000028s00003574.1
ATGATTTTCCTAGCCACCGCGAACGTGCCATCTCCGGCGGAAGCCGCCGGCGGGGGGCAGTGGCAGCTCCTGCAGAAAAACATCGGCATTGTGGGCATGCACATGCAGCTACTCCACAACGACCGCGTCGTAATCTTCGACCGCACCGACTTCGGCCTTTCCAATCTCTCCCTCCCCAACGGCAGGTGCCGCAACAACCCCCAAGAGATGGTCGTCAAAACAGACTGCACCGCCCACTCCCTCGAATACGACGTCGCATCCAACACGTTCCGACCACTCTTCGTCCAGACCAACGTCTGGTGTTCCTCCGGCTCCGTCTCCCCCGGCGGCACTCTCGTTCAGACCGGCGGCTTCAACGATGGCGACCGTACCGTTAGGACCTTCAACCCCTGTCCCAACTGCGACTGGCGAGAACTCCAAAACGGACTCGCGGCACGTAGATGGTACGCGACCAATCACGTGCTGCCAGATGGCAGACAGATCGTAATCGGAGGGAGGAGGCAATTCAACTACGAGTTTTACCCAAAGACAAAAGGAGCAACTGCGAAAAACACATACAGTTTACCCTTTCTGGTACAGACAAACGACGCTGGCGTTGAGAACAATCTTTACCCCTTTGTTTTCCTCAATGTTGATGGCAACCTCTTCATCTTCGCCAACAACCGCGCCGTTTTGTTCGACTACAACAACAACAATGTCGTCAAGACATACCCTTCGATTCCCGGTGGAGATCCCAGGTGTTATCCCAGTACTGGTTCCGCCGTGTTGCTTCCATTGAGGAATTCGAATTCGAATTCTTCACGAGTGGAAGCTGAGGTCTTGATTTGCGGTGGAGCCCCGAGTGGGTCTTTTAACGAGGCACTCAAGGGTCGGTTTATCGGGGCATTGAATACCTGCGCTCGCATTAAAATAACCGACCCCAACCCGAAATGGGTCGTGGAAACCATGCCGGGTGGGAGAGTCATGAGCGACATGGTCTTACTCCCTAACGGCGACGTTTTGATTATTAACGGAGCAGCTGTGGGGACCGCGGGCTGGGAATTGGGCCGGGACCCGGTTTTGAATCCGTTTCTTTATAAGCCCAATAACCCGGTTGGGTCCCGGTTCGAGTTGCAGAACCCGTCGAGTATCCCACGGATGTATCACTCCACCGCCGTTTTGCTTCGCGACGGTCGGGTTCTTGTTGCAGGGAGCAATCCTCACATTTATTACAATTTCACCAACGTGTTGTTCCCGACGGAGTTCCGTTTGGAGGCGTTTTCTCCGTCTTATCTTGAGCCTGGATTCGATGCGGTGCGTCCCAGGATTGTGTCCCCTGCTCCCCANTCCCAGACCAAACTCAAGTACGGTCAGAGGTTGAAGCTTCGGTTTCGGGTAACGGCGGCGAGGAATTCGGTGTCGGTGACAATGGTGGCGCCGCCTTTTAACACGCACTCGTTCTCCATGAACCAGAGGNTGTTGGTGCTGGAACAAAACGGTTTGGGTAATGTTGGGGAATCAACGTATGAGGTTGAAGTGACCACACCCGGTTCACCTATTCTTGCACCGCCTGGTTACTATTTACTGTTTGTGGTCCACCAAGAAATTCCAAGCCAGGGCATTTGGGTCCAAATACTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	554890	556509	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003574.1	PF07250.6	Glyoxal_oxid_N	33	278	5.20E-109
Glyur000028s00003574.1	PF09118.6	DUF1929	433	538	1.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.473
SRR1783600	control	0.473
SRR1783602	moderate drought stress	0.481
SRR1811619	moderate drought stress	0.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.022
DRR006520	Root Summer glycyrrhizin high producing strain	0.092
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.068
DRR006524	Root Summer glycyrrhizin low producing strain	0.004
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.102

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.839
SRR2868004	Drought Stress (root)	0.685
SRR2967015	Control (root)	0.752

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.875
SRR9715740	Leaf	1.989
SRR9715741	Leaf	3.572
SRR9715739	Root	1.756
SRR9715742	Root	2.347
SRR9715743	Root	2.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.063
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.118
SRR8400027	Control - Root	0.123