Gene detail

Gene detail information of Glyur000028s00003571.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16310.1	0	LSD1-like 3
NR	KEH36227.1	0	polyamine oxidase [Medicago truncatula]
COG	YP_007109585.1	2.00E-56	amine oxidase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|F4JLS1\|LDL3_ARATH	0	Lysine-specific histone demethylase 1 homolog 3
trEMBL	tr\|A0A072V301\|A0A072V301_MEDTR	0	Polyamine oxidase {ECO:0000313\|EMBL:KEH36227.1}

Sequence

Transcript Sequence

>Glyur000028s00003571.1
CGAATTAGGATTGCCTTGTAAGCATGAGCTTTAATTTTATCAAGATAGAGAAGTGGAAAGTCACGGTTCACATTCGGGATTTTTCGTATGTTGATTCGGGCACTGAAGTGGGGATAGCATGGAGGAGTATTTTGGAAGGTTTTGTTGGAAANCTAGGGCTACACTGAAAGGATATGGATGGCCAAAATATGATTGNTGGGGCCAATAACAAGAGGACTAAACATGTGGAAACTGGTTTTGATTCNGAAGATAACGAGCCCATTGGCTCTATATTTAAGCTCAGGAAGCCGCGCGGTGCGAAGAAGAAGGCTACCTTTGCATTAGAGGGCACTGGTGGTGGTGGAGGCAAGAATGCTGACTCTATTGGGAAGAATTTGGTTGCTGCACAAGAGGATTTGGGGAGTANGGACGATACCCTTGCTAGTTTTAGGAAGAGGTTGAAGGGTCCTAAGAGGGGGCAGGGATCTGGAGCTGCAAGAGGGAGGGTTTCTGCTCCGAATGTGGTGGTGGAGTCCTCGAATGTTTCTTGCCAGNATGTAGGTTTGGATGAAAAATCGTCGTTGAATACGGACAGTATCTGTGAGGGGCGGGATGCAGGGGATAATGGATCTGATTTGGCTGTGGATATGAAGACAACAGGCAGCTGTCAAGTAAAAGTAGGGGGACCTAATGTGGAGTTGGCACTGAAGGGAATTCAGGGCCATACCGTGTCTGAAGGTGATTTGGTTGCTCAGGGGTCTAGAAACGCTCTAAGAGATGAGAAAGGGGTGGGTGTCTTGATTAGTGCTGGCCTGCAGCACTCTTCTGATGAAATAATGGAAGATTCTTTGTCAGAAGTTTTCCAAAAGGCACANTCTAATTTTGTCGGCAAGTCCTGTAACACTTTAAGTTCAAAGCAGAATTGTGGGAGCCAGAATTTGAAGGATGGGTTGAGCCTTGACCCCAAAAGTGCCACACAAACTGNTGAGGGCATTTGTGATTCAAACATTTCCGATGGACTGTTAGTTGATCCCTGTTTCTCAGTCAATGGCTGCTATNGAGATAGCCAGCAATTGTCTTGTGTACAATCTGAAGATTTTTGTTCTCCTTCCGACCAAAAAGNTGCATTGCAAGAAAGAATTCTCAATGATAGTTTAAAGGAGTGTTCTGCCATATTGCATGATGTTGAAAAAATAATTGACACTGTCTCTCTCTCAAAAATGGGGGAAGGGGTGCCTCAGTTTAGTGAGGGTGAGCTCAAGAGCAGATTGANTGATGAACAAGCACAGGTGTGCAATAGTACTTCAAAATATGGTGATTTTACTTCTATGGAGAAAGAAAAGCTATTCCCTTGTGACTCTGAGCCCTTGACTAAATCTTCCGAAAATATACTGAATGAAAATAGTCANATGGTTTCTGGAAGTGTAAATTTTGAAACTAAGTTTGTTTCTGGTAGAAGTTGCTGCGATCATAATAGTTTAGATACAAAGGCCGAAGTGCAAGATTTTGTTTTAGGTTTTTTGCCCGAAAATAATTGTGCAGTTTCTGGTGGTTGTTTATATCCTGTGGTGTCTAATGAAGCAAATAAATCTGAATTGGCTGCTCAGCCAAATCACCTAGAGATACCTTTAGAAGTACATAATATTCCAAAGGACNCTATTGCCTTTATCCCAGAATGCAGTTCGGTGTTAGATCCAACTCAACCTTCCCATAATACATTTGAAGAGGGTTCTCTTCCAAATGATNATTGTTTCTATGCCAAGAAAGAAACTGATGATGCCTCCCCTCAGAGTGGAATTCCAGAGGAAAATGAGAATTATGTAGAATATGCTGCCTCTGTGTCCGAGGTTGCCAATATTGATAAGACATCATCTGTTATGCGTCNCAAGGCTAAAAAGCGTAGACATGGAGACATGGCGTATGAAGGGGATGCTGATTGGGATGTTTTAATAAATGACCAAGTTTTTCTTGAAAGCCAGGGTGGTGTTGATGGTGAGCGNATTCTTAGATCGAGAGCAAAGCTTGATTCGTCTTTGAATGTTGTTGAAGAATCTGAAAGTGTTGCTGTAGCAGTATCTGCTGGGCTGAAAGCCCATGAAGCTGGTCCAGTTGAGAAAATAAGATTTAAGGAGATATTAAAGCGTAAAGGGGGTCTCCAGGAATATTTGGATTGCAGAAATCAGATCTTAAGTCTTTGGAGCAGTGATGTCACTCGAATTTTGCCTCTTGCTGACTGTGGGGTTAGTGATACACTTTCTGAGGACGAACTTCATCGCTCTTCTCTTATTAGGGAGGTCTATGCATATCTTGATCAATGTGGTTATATAAATGTTGGAATTGCCTCTCAAAAGNNCAATGTTGGAAGTAGTACAAGGCATAATTATAAACTTATAAGAGAAAAAAGATTTGAAGAAAGTTATGCAGCTTCTGTTGCTGACTCTGAAGACGGAGTTTCCTTTATTGTTGGTCAGACTAAAGAGTCAGATGCTTCTGTAGAGACTAAGAGTGGTCTTATAGGAGATAATGAAAACCTGACAACTGAAGCTACGGAAGACAGGAGGCATGTTAATGTGGTGACAACGGATTCATCAAACATTACACAACATGAAGAAAGAAAGAATTATGATTACCAGGAAAATGGGGGGATTCAGGATGGATCAAGTCGGATTATACATGGGAATGTTAACAGTTCCGAGCAAAGCAATTTATCTACCTGTGTCAGATCTGCTTCAGGTAATCAGATAGGTGATCTACCGAAGTCTGACTCAGAGGTTAGAAAGAGAGTGATTGTCATTGGAGCTGGTGCTGCTGGGCTAACTGCTGCTCGCCAATTGCAACGTCTGGGATTTCTTGTAACTGTACTTGAGGCAAGGAGTCGGATAGGAGGTCGAGTATTTACAGATCGCTCATCTCTTTCTGNCCCCGTGGATCTTGGTGCTAGCATTATCACTGGTGTTGAGGCTGATGTGGCTACTGAAAGAAGACCANATCCTTCCTCATTGGTTTGTGCTCAGTTGGGTCTTGAGCTGACCATGCTAAACAGTGAGTGTCCTCTTTATGACATAGTGACGGGACAAAAAGTTCCTGCAGATATGGATGAAGCACTGGAAGCTGAATATAATTATCTTCTTGATGATTCGGTTTTGCTTGTTGCCCAGAAGGGTGAACAGGCCATGCGAATGTCCCTTGAACATGGTTTAGAATATGCTCTTAAGAGGCGCCGTTTGGAGTGTTCTGGAAGANGTAATGAACAAATTGAACAAAATAATTATGCAGACAGTCCTTTTGATTCCAAAAGAGGCAATACCCAGGGTAAAAAATTTGAAGAGGAGGTTTTGAGTCCTCTGGAGAGGAGGGTTATGGATTGGCACTTTGCTAATTTGGAGTATGGATGTGCTGCTATGCTTAAGGAAGTTTCTCTCCCCTACTGGAATCAAGATGATGTGTATGGAGGATTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTTTAGGAGAAGGGCTTGTCATTCACTTGAACCATGTTGTAACAAATGTTTCATATGGAAGCAGGGAATCAGGCCAGGGTAATAAAGTCGAAGTTGCTACATCAAATGGCAATGAGTTCTTTGGAGATGCTGTTCTGGTTACTGTTCCATTAGGCTGCTTGAAGGCTGAAACTATAAAATTCACTCCGCCTTTGCCCCCATGGAAATATTCTTCTATTCAGCGTCTTGGATTTGGAGTTCTCAATAAAGTGGTCTTGGAATTTCCTAGCGTGTTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCCGAGGAGACGGGCAGAAGAGGCCACTGCTTTATGTTCTGGAATGTCAGGAAGACAGTTGGGGCTCCGGTCCTCNTAGCATTAGTGGTTGGGAAAGCAGCCATAGATGGTCAGAATTTAAGCTCTTCTGATCATGTCAACCATGCATTAATGGTTCTTCGGAAACTTTTTGGGGAGGCCTCAGTACCTTATCCCATTGCATATGTTGTGACNGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTACTCTTATGTTGTTGTTGGAGCATCGGGAGAAGACTATGATATATTAGGGAGGCCAGTTGACAACTGTTTGNTTTTTGCTGGTGAAGCAACCTGCAAAGAGCATCCTGATACAGTTGNTGGTGCAATGATGAGTGGACTCCNCGAGGCTGTGCGCATAATTGACTTATTTAGCACCGGAAATGATTATACAGCAGAGGTGGAAGCAATGGAGGCTGCACAGAGACAGTCAGATACTGAAAGAGATGAAGTTAGGGATATAATAAAGAGACTTGATGCAGTGGAGCTTTCTAACGTATTGTACAAGAAGTCTTTAGATGGTGCTCGAATTTTAAGCCGGGAGGCTTTACTAAAGGACTTGTTCCTTAATGCAAAAACCAATGCTGGGCGCTTGCATGTGGCCAAACAGTTGCTAAGTCTTCNTGTTGAAAACTTGAAATCCTTTGCTGGGAGTAAGAAGGGGCTAAGCATTCTCAACTCCTGGATACTGGACTCAATGGGGAAGGATGGCACCCAACTCTTGCGACATTGTGTGCGTCTTCTTGTGCTTGTTTCAACTGATTTACTTGTTGTGCGCTTATCAGGCATTGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCNTGATATTCGTGCTATAGCAAGCCANTTGGTTAGTGTATGGCTTGAAGTCTTCCGCAAGGAAAAAACATCTAATGGAGGATTAAAGCTGTCGAGACAAGCAAATGCTGTAGATATAGCAAAGAGAAAATCTATTAAAGATTCAGCATCTGGAAAACCACCTTTGAGTATGCATCATAATACCTTCGAGAATAAAGGAAACATACTAACTCCTGCAAGTAATTCACNTTCCATTGCACATATGAAGAACTCACATGGCAAACAAGGAAGACGGCTAGCAGAAAATGACTTACGGCATGATGTCAGTTCTTCTAGGTCCCAAGGTTCAATGGGCAAAATAGAATCTGAGATTGAGGATAACCACTGTGCTATGTCTGAAGAAGAACAGGCTGCTATAGTTGTTGCAAAAGCTGCTCGTGCAAAAGCACTTGCTGCTGCTGAGGTATATGCCTCTGCAGAAGCTAGCTGCAATAAGCTACTCCAGCTTCCGAAGATACCCTCCTTCCACAAATTTGCGAGACGGGAGCAATATTCACAAAATGATGAGACTGATAGTAGGAAAAAATGGTCTGGTGGAGTTTTGGGAAGGCAGGATTTTGATAACCTCTCACAGCGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGTTGCTGTGGATAGCAGTATATACACAAAAGCTTGGATTGACACAGCTGATGGTGTGGGAATAAAAGACTATCATGCCATTGAGAGATGGCAATCTCAAGCAGCTGCAGCAGGTTCTGATTTATCTAATCCAACCATACACTCAAAGGATGAAGAGGATTCAAATGCCTGTTCAAGGCTACCCAGCTGGAAGCATGATGGCATCGAAAATGAGAGCTCTATTTCACAGGTTACTGTGAATAAGGAGACTTTGAAAAGTGATTCTCGAGGAGCAGATCGTATTAAACAGGCTGTTGTGGATTATGTTGNGTCTCTACTTAGTCCCCTTTATAAGGCAAGGAAGCTAGATAAGGATGGATACAAGGCTATAATGAAGANAAGTGCAACCAAGGTCATGGGGCAATNCACAGATTCAGAAAAAGCCATGACTGTTCATGAGTTTCTAGATTTGAAGCGGAAGAATAAGAGTACTGAAGTGGAGTACTCTGCAAACAGGCTTTACTATTTTATAANCAAGCTCAATGCACACCCAGTTGGACCTCTGCATGACAGGCTTCTGGATGTTTGA

Protein Sequence

>Glyur000028s00003571.1
MDGQNMIXGANNKRTKHVETGFDSEDNEPIGSIFKLRKPRGAKKKATFALEGTGGGGGKNADSIGKNLVAAQEDLGSXDDTLASFRKRLKGPKRGQGSGAARGRVSAPNVVVESSNVSCQXVGLDEKSSLNTDSICEGRDAGDNGSDLAVDMKTTGSCQVKVGGPNVELALKGIQGHTVSEGDLVAQGSRNALRDEKGVGVLISAGLQHSSDEIMEDSLSEVFQKAXSNFVGKSCNTLSSKQNCGSQNLKDGLSLDPKSATQTXEGICDSNISDGLLVDPCFSVNGCYXDSQQLSCVQSEDFCSPSDQKXALQERILNDSLKECSAILHDVEKIIDTVSLSKMGEGVPQFSEGELKSRLXDEQAQVCNSTSKYGDFTSMEKEKLFPCDSEPLTKSSENILNENSXMVSGSVNFETKFVSGRSCCDHNSLDTKAEVQDFVLGFLPENNCAVSGGCLYPVVSNEANKSELAAQPNHLEIPLEVHNIPKDXIAFIPECSSVLDPTQPSHNTFEEGSLPNDXCFYAKKETDDASPQSGIPEENENYVEYAASVSEVANIDKTSSVMRXKAKKRRHGDMAYEGDADWDVLINDQVFLESQGGVDGERILRSRAKLDSSLNVVEESESVAVAVSAGLKAHEAGPVEKIRFKEILKRKGGLQEYLDCRNQILSLWSSDVTRILPLADCGVSDTLSEDELHRSSLIREVYAYLDQCGYINVGIASQKXNVGSSTRHNYKLIREKRFEESYAASVADSEDGVSFIVGQTKESDASVETKSGLIGDNENLTTEATEDRRHVNVVTTDSSNITQHEERKNYDYQENGGIQDGSSRIIHGNVNSSEQSNLSTCVRSASGNQIGDLPKSDSEVRKRVIVIGAGAAGLTAARQLQRLGFLVTVLEARSRIGGRVFTDRSSLSXPVDLGASIITGVEADVATERRPXPSSLVCAQLGLELTMLNSECPLYDIVTGQKVPADMDEALEAEYNYLLDDSVLLVAQKGEQAMRMSLEHGLEYALKRRRLECSGRXNEQIEQNNYADSPFDSKRGNTQGKKFEEEVLSPLERRVMDWHFANLEYGCAAMLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSTVVESLGEGLVIHLNHVVTNVSYGSRESGQGNKVEVATSNGNEFFGDAVLVTVPLGCLKAETIKFTPPLPPWKYSSIQRLGFGVLNKVVLEFPSVFWDDAVDYFGATAEETGRRGHCFMFWNVRKTVGAPVLXALVVGKAAIDGQNLSSSDHVNHALMVLRKLFGEASVPYPIAYVVTDWGRDPFSYGAYSYVVVGASGEDYDILGRPVDNCLXFAGEATCKEHPDTVXGAMMSGLXEAVRIIDLFSTGNDYTAEVEAMEAAQRQSDTERDEVRDIIKRLDAVELSNVLYKKSLDGARILSREALLKDLFLNAKTNAGRLHVAKQLLSLXVENLKSFAGSKKGLSILNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLVVRLSGIGKTVKEKVCVHTSXDIRAIASXLVSVWLEVFRKEKTSNGGLKLSRQANAVDIAKRKSIKDSASGKPPLSMHHNTFENKGNILTPASNSXSIAHMKNSHGKQGRRLAENDLRHDVSSSRSQGSMGKIESEIEDNHCAMSEEEQAAIVVAKAARAKALAAAEVYASAEASCNKLLQLPKIPSFHKFARREQYSQNDETDSRKKWSGGVLGRQDFDNLSQRSHSNEIASHLNFREHSGESVAVDSSIYTKAWIDTADGVGIKDYHAIERWQSQAAAAGSDLSNPTIHSKDEEDSNACSRLPSWKHDGIENESSISQVTVNKETLKSDSRGADRIKQAVVDYVXSLLSPLYKARKLDKDGYKAIMKXSATKVMGQXTDSEKAMTVHEFLDLKRKNKSTEVEYSANRLYYFIXKLNAHPVGPLHDRLLDV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	523497	531576	-

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0055114 oxidation-reduction process

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003571.1	PF04433.12	SWIRM	625	712	1.20E-08
Glyur000028s00003571.1	PF01593.19	Amino_oxidase	872	1343	3.50E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.664
SRR1783600	control	1.691
SRR1783602	moderate drought stress	2.652
SRR1811619	moderate drought stress	2.594

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.749
DRR006520	Root Summer glycyrrhizin high producing strain	2.818
DRR006521	Root Winter glycyrrhizin high producing strain	3.662
DRR006522	Root Winter glycyrrhizin high producing strain	3.719
DRR006523	Root Summer glycyrrhizin low producing strain	2.613
DRR006524	Root Summer glycyrrhizin low producing strain	2.592
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.924
SRR2868004	Drought Stress (root)	6.662
SRR2967015	Control (root)	6.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.540
SRR9715740	Leaf	4.147
SRR9715741	Leaf	4.043
SRR9715739	Root	0.535
SRR9715742	Root	5.348
SRR9715743	Root	4.910

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.531
SRR8749028	MeJA induced 9h	3.860
SRR8749029	MeJA induced 9h	1.145
SRR8749030	Uninduced	0.663
SRR8749031	Uninduced	0.804
SRR8749032	Uninduced	0.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.947
SRR8400027	Control - Root	5.800