Gene detail

Gene detail information of Glyur000028s00003570

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24160.2	1.00E-147	alpha/beta-Hydrolases superfamily protein
NR	XP_006577978.1	0	PREDICTED: abhydrolase domain-containing protein 4-like isoform X3 [Glycine max]
COG	YP_007127971.1	5.00E-17	Tropinesterase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|O22975\|LPAAT_ARATH	0	1-acylglycerol-3-phosphate O-acyltransferase
trEMBL	tr\|I1JT54\|I1JT54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02900.1}

Sequence

Transcript Sequence

>Glyur000028s00003570.1
GCGAATCATAATTGAGAATTTGATTTTCTTTCCGCCGACTTCTATTGGTCCCTCCGAACAACAGCACAGCGGGTAAGACGGTAAGTAAATTAAGTTTCAACGTGGTTTGGGATTGCGTGGCACGCAATCTACCGTTGCTTTATCCAAAGAATTTAGGAGGAGAGGAGAGAATNGTATCTGCGGTAGCGCCGGTGGTGATTCATAATTTATTCAAACGCAAGGGTTGGCGAGAATGGCGGAAGAGATTAGCAGAAACGACGCCGGAATATCTACGAAAACGACGAAACGGTTCTGGCCGTGGCTTTCTGCACTCCGTTGGATTCCCACTTCTATCGATCACATCGTCGCCGCCGAGAAACGCCTTCTGTCCATCGTCAAGACTGACTATGTTCAAGAGCATGTTAACATAGGCTCTGGTCCTCCTGGGTCCAAAGTTAGATGGTTCCGTTCATCCAGCAACGAGCCGCGTTTTATCAACACCGTTACGTTTGATAGTAAAGATGACTCTCCTACGCTTGTAATGGTTCATGGATATGCTGCTTCCCAGGGTTTCTTCTTTCGCAATTTTGATGCTCTCGCCTCTCGTTTCAGGNTCATTGCTATTGATCAACTTGGTTGGGGTGGATCAAGCAGGCCTGATTTCACATGCAGAAGTACTGAAGAAACTGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGGAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCGAAATATGCACTCAAGCACCCTCAGCATGTACAACACTTAATTTTGGTGGGACCGGCTGGGTTTACATCAGAATCTGATACAAAGTCTGAGTGGGTTACAAGGTTTCGAGCAACATGGAAGGGAGCAGTTCTGAACCATCTATGGGAATCCAATTTTACACCTCAGAAACTTGTCAGAGGTTTCGGTCCTTGGGGTCGTAACATGGTCAACAGGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATGCTGACTGAAGAGGAATCAAGATTGCTGACAGATTATGTTTACCATACATTGGCGGCCAAAGCTAGTGGGGAGCTGTGTTTAAAATATATTTTTTCATTTGGTGCATTTGCTAGAATGCCCCTTCTTCTCAGATAGAAACAATATATGTTGACTGCATGTTGGGGAATGATAGAATCATATAATAGGCTAATCGCTGCTGNTGGTGGTCCCAAAACTGCATCTGATGGTTTGTACATATTTATATCCTGTATCGTCAAGCAAACCCCGCCTGTACATCCCGAGAGGAAAATAAGTGGGTAAAAAAGGAAGGGAGCTGTGAATGAGAAACGAAGAAATTTTTTTACTCTTTCCATTGCATAATATCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	514316	517547	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003570.1	PF12697.2	Abhydrolase_6	95	239	2.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.444
SRR1783600	control	3.788
SRR1783602	moderate drought stress	3.177
SRR1811619	moderate drought stress	3.421

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.788
DRR006520	Root Summer glycyrrhizin high producing strain	6.048
DRR006521	Root Winter glycyrrhizin high producing strain	16.560
DRR006522	Root Winter glycyrrhizin high producing strain	15.921
DRR006523	Root Summer glycyrrhizin low producing strain	10.025
DRR006524	Root Summer glycyrrhizin low producing strain	9.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.211
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.617

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.078
SRR2868004	Drought Stress (root)	52.049
SRR2967015	Control (root)	36.148

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.885
SRR9715740	Leaf	13.124
SRR9715741	Leaf	25.746
SRR9715739	Root	2.796
SRR9715742	Root	8.040
SRR9715743	Root	7.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.961
SRR8749028	MeJA induced 9h	39.946
SRR8749029	MeJA induced 9h	33.048
SRR8749030	Uninduced	63.634
SRR8749031	Uninduced	84.232
SRR8749032	Uninduced	56.547

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.934
SRR8400027	Control - Root	17.334