Gene detail

Gene detail information of Glyur000028s00003565.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75640.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_004500957.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum]
COG	YP_004775215.1	6.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|G7J4P1\|G7J4P1_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES73982.2}

Sequence

Transcript Sequence

>Glyur000028s00003565.1
ATGGCAACAACGGCTATATTTCTCATCAGCTCCATTGCAATGGTAGTAATCACATACTTCACCACCTTAACGTTAACATGCGCAGAGAGCAGAAACAGCAACGTGACGACTACGACTAGTGTATCGGAGATCGAAGCCCTAACGGCGTTCAAGCAGAACCTAGACGACCCTCTTGGTTCCATGGAGGGTTGGGACCCAACGACGCCGTTCGCACCGTGTGACTGGCGCGGCATTGTGTGCTTCAACAACAGAGTCCACCAAATACGGCTGCCACGTGTCCACCTCAGCGGCACAATCTCCGCTTCCCTCTCAAACCTCACACAGCTTCGGAAACTGAGCCTCCACTCCAACAACCTCAACGGCTCCATCCCTCCGTCGCTCTCAAACTGCCTCTTCCTCCGCGCCGTCTACCTCCACAACAACCACCTCTCCGGCACACTCCCGCCGCATCTCCTCCTCAACCTCACCAACCTCCAGATCCTCAACGTCGCACACAACCACCTCTCCGGCACACTCCCCTCCAACGTCCACCTCTCCGATTCACTCCGGTTCCTCGACCTCTCCTCCAACGCATTCTCCGGCGACATTCCCGGAAACTTCTCCTCCGACTCCAAGCTCCAGCTCATCAACCTCTCCTACAACTCCTTCTCCGGCGGGATTCCGGCCACCGTCGGAGCACTACAAAACCTCGAGTACCTGTGGCTGGACTCCAACAACCTCCACGGAACCTTGCCCTCTGCTCTCGCGAACTGCTCCTCNCTGGTTCATCTCAGCGCAGAGGACAATGCCATTGGTGGGCTGATACCTTCCACACTGGGAACGATGCCAAACCTTCAGGTGCTGTCACTTTCCATGAATCGACTTTCTGGTTCTGTCCCCACTTCTCTGTTTTGTAATAGCGATTGGTCTCATCTTCGAATAGTTCAGCTTGGCTTTAATATGCTCACGGGTATTTCCGAGCCGCCAAGTGGGAAATGCGTTACCCTTTTGGAGTTTTTGGACCTTAAAGAGAATAACATTACTACTAGCGCTCTGTTTCCTTCTTGGTTGACCAATGCGACGTCGTTGAGGGCTCTCGATCTCTCTGGAAACTNGTTTTCGGGTTCTCTACCTGCGGGTATCGGGAACCTCTTCAGGTTAGAAGAACTGAGACTTTCCGGTAACTCGTTTTCCGGTGGGGTCCCCGGTAGCATTGTGGGTTGTGGGTCGTTNCGGGTTCTTGATCTTCAGGGGAACCGTTTCTCTGGTCCTGTTCCTCCTTTTCTTGGACAAATGAGGAGCCTCAAGGAGCTGTCTCTTGGTGGTAACCTCTTCACCGGTTCGATACCCANGAGTTATGGAACGCTTCATGAGCTAGAGGTTCTGGATTTAAGCGACAATAAGCTTACGGGGGTTTTGCCATTGGAGATCATGCAATTGGGAAACATGAGTTCTTTGAATCTCAGCAACAACAGATTCTTGGGGCAAGTAATTTCGTCTCGCATTGGGGACTTGACATCTTTGCAGGTTCTTAATTTGAGTCATTGTGGGTTTTCANGGAGGGTTCCCTCTACACTGGGGAATTTGATGAGGCTGAGGGTGTTGGATTTTAGCAAGCAGAACCTTTCCGGTGAATTGCCCGTTGAGCTATTCGGGTTACCGAGCCTGGAAATTGTGGCACTTGAGGAGAACCGTTTAAGTGGTGNTGTTCCTGAGGGTTTCAGCAGCATAGTTAGCCTAAGGTATCTTAATCTCAGCTCCAATGCATTTGTTGGCANCATTCCTACAACCTACGGGTTTCTTAGCTCCTTGGTTGTTCTCTCTTTGTCTCACAATGGCATCTCTGGTGCAATACCTCCTGAGATTGGGGGTTGTTNTCAGCTCGAAGTTCTCCAGCTGGATTCAAATCGTTTGGGAGCCAACATTCCCNGTGCCATCTCTCGCCTTTCACGTTTAAAGGAGCTCAATTTGGGACACAATGGATTGAATGGTGATATCCNAGATGAGATATCAAGGTGTTCCTCGTTGACTTCGCTTGTTTTGGGTGGTAATAACTTGACGGGTCACATACCAGAATCATTCTCAAAGTTGTCAAAATTGACTGCATTGGATCTTTCCTCAAATATGTTTTCAGGGGAAATCCCTGTTGGTCTTTCACGGATTTCTGGTTTGAAGTACTTGAATGTATCCGACAATGACCTTGTGGGTGAGATTCCAGAAGTGCTGGGTTCTCGATTCAATGACCCTTCTGTGTTCGCGATGAACAAGAGGCTATGCGGGAAGCCTTTGCATCATAGAGAGTGTGGGAATGTGAAGAGAAGAAAGAGAAGGCTAATAATCTTCATAGGCGTGGCTGTGGNTGGACTATGCCTTTTGGCACTGTGCTGTTGCGGCTATGTTTACAGCCTCTTGAGGTGGCGCAACAAGCTTCGAGAAGGGGTAACGGGTGAGAAGAAAAGGACTAGCCCCACAAGTGCAAGCTTAGGGGGAGGAACAGATAGATCAGGAAGAGGGAGTGGTGAAAACGGTGGGCCAAAGCTAGTAATGTTCAACAANAAGATCACATACGCAGAGACACTAGAAGCAACAAGAAACTTTGATGAGGAAAACGTGTTGAGCAGGGGAAGATATGGGCTTGTTTTCAAAGCCTCATACCAAGATGGAATGGTTCTATCCATTCGACGCCTCCCAGAAGGAGGAGCACAATTCATGATGGATAATAATGAGGGCACTTTCCGCAAAGAAGCAGAATCACTGGGCAAAGTGAAGCACCGAAACTTAACAGTTCTTCGGGGCTATTATGCAGGACCACCACCTGACGTGAGGCTTCTGGTTTATGACTACATGCCCAATGGGAACCTTGGGACATTGCTTCAAGAAGCTTCTCAGCANGATGGGCACGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTCGGCATTGCTCGTGGCTTGGCTTTCTTGCACTCGGTGCCAATAGTACACGGTGACTTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTCGAGGCCCATTTGTCTGAATTCGGGTTGGANAGGCTCACANCAANGGCAAACCCAGTNGAAGCATCGTCGTCAAGTTCGACCNCAGTTGGTTCATTGGGCTACGTGGCACCGGAAGCTGCGTTGACCGGTCAACCCACGAAGGAGGGTGACGTGTACAGCTTCGGGATTGTGTTGTTGGAGATACTGACGGGGAGGAAGCCGGTGATGTTCACGCAGGATGAGGACATAGTGAAGTGGGTGAAGAGGCAGTTGCAGAGGGGACAGATTTCGGAGCTGTTGGAGCCTGGTTTGCTTGAGCTTGATCCCGAGTCGTCGGAATGGGAAGAGTTCTTGTTGGGTATCAAGGTTGCTCTTCTCTGCACTGCACCTGATCCTCTTGATCGACCTTCCATCAACGACGTCGTTTTCATGCTCGAAGGTTGTCGTGTCGGNCCCGAAATCCCTTCCTCCGCTGATCCCACAACACTACCTTCCCCTGCTTGA

Protein Sequence

>Glyur000028s00003565.1
MATTAIFLISSIAMVVITYFTTLTLTCAESRNSNVTTTTSVSEIEALTAFKQNLDDPLGSMEGWDPTTPFAPCDWRGIVCFNNRVHQIRLPRVHLSGTISASLSNLTQLRKLSLHSNNLNGSIPPSLSNCLFLRAVYLHNNHLSGTLPPHLLLNLTNLQILNVAHNHLSGTLPSNVHLSDSLRFLDLSSNAFSGDIPGNFSSDSKLQLINLSYNSFSGGIPATVGALQNLEYLWLDSNNLHGTLPSALANCSSLVHLSAEDNAIGGLIPSTLGTMPNLQVLSLSMNRLSGSVPTSLFCNSDWSHLRIVQLGFNMLTGISEPPSGKCVTLLEFLDLKENNITTSALFPSWLTNATSLRALDLSGNXFSGSLPAGIGNLFRLEELRLSGNSFSGGVPGSIVGCGSXRVLDLQGNRFSGPVPPFLGQMRSLKELSLGGNLFTGSIPXSYGTLHELEVLDLSDNKLTGVLPLEIMQLGNMSSLNLSNNRFLGQVISSRIGDLTSLQVLNLSHCGFSXRVPSTLGNLMRLRVLDFSKQNLSGELPVELFGLPSLEIVALEENRLSGXVPEGFSSIVSLRYLNLSSNAFVGXIPTTYGFLSSLVVLSLSHNGISGAIPPEIGGCXQLEVLQLDSNRLGANIPXAISRLSRLKELNLGHNGLNGDIXDEISRCSSLTSLVLGGNNLTGHIPESFSKLSKLTALDLSSNMFSGEIPVGLSRISGLKYLNVSDNDLVGEIPEVLGSRFNDPSVFAMNKRLCGKPLHHRECGNVKRRKRRLIIFIGVAVXGLCLLALCCCGYVYSLLRWRNKLREGVTGEKKRTSPTSASLGGGTDRSGRGSGENGGPKLVMFNXKITYAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRLPEGGAQFMMDNNEGTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQXDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDLKPQNVLFDADFEAHLSEFGLXRLTXXANPVEASSSSSTXVGSLGYVAPEAALTGQPTKEGDVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSINDVVFMLEGCRVGPEIPSSADPTTLPSPA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	495667	499155	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003565.1	PF08263.7	LRRNT_2	43	80	2.00E-07
Glyur000028s00003565.1	PF00560.28	LRR_1	108	130	0.3
Glyur000028s00003565.1	PF00560.28	LRR_1	181	201	0.33
Glyur000028s00003565.1	PF00560.28	LRR_1	229	251	0.5
Glyur000028s00003565.1	PF00560.28	LRR_1	277	299	0.39
Glyur000028s00003565.1	PF00560.28	LRR_1	355	377	0.15
Glyur000028s00003565.1	PF13855.1	LRR_8	427	486	5.80E-07
Glyur000028s00003565.1	PF00560.28	LRR_1	500	522	0.17
Glyur000028s00003565.1	PF13855.1	LRR_8	524	582	1.40E-07
Glyur000028s00003565.1	PF00560.28	LRR_1	596	618	0.92
Glyur000028s00003565.1	PF13855.1	LRR_8	643	702	2.50E-09
Glyur000028s00003565.1	PF00069.20	Pkinase	862	1088	1.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.084
SRR1783600	control	0.084
SRR1783602	moderate drought stress	0.011
SRR1811619	moderate drought stress	0.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.093
DRR006520	Root Summer glycyrrhizin high producing strain	0.092
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.127
DRR006524	Root Summer glycyrrhizin low producing strain	0.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.843
SRR2868004	Drought Stress (root)	1.222
SRR2967015	Control (root)	1.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.456
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.112
SRR9715739	Root	0.043
SRR9715742	Root	0.399
SRR9715743	Root	0.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.863
SRR8749028	MeJA induced 9h	1.190
SRR8749029	MeJA induced 9h	0.993
SRR8749030	Uninduced	0.351
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.198

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.269
SRR8400027	Control - Root	0.384