Gene detail information of Glyur000028s00003560 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75540.1 | 8.00E-53 | salt tolerance homolog2 |
| NR | XP_003523557.1 | 4.20E-98 | PREDICTED: probable salt tolerance-like protein At1g75540-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LQZ7|BBX21_ARATH | 6.00E-71 | B-box zinc finger protein 21 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1JT58|I1JT58_SOYBN | 2.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 454381 | 456377 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.291 |
| SRR1783600 | control | 9.319 |
| SRR1783602 | moderate drought stress | 25.672 |
| SRR1811619 | moderate drought stress | 25.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.613 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.150 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.156 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.761 |
| SRR2868004 | Drought Stress (root) | 34.164 |
| SRR2967015 | Control (root) | 34.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.281 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.079 |
| SRR9715739 | Root | 5.668 |
| SRR9715742 | Root | 4.675 |
| SRR9715743 | Root | 3.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.414 |
| SRR8749028 | MeJA induced 9h | 6.742 |
| SRR8749029 | MeJA induced 9h | 3.565 |
| SRR8749030 | Uninduced | 5.995 |
| SRR8749031 | Uninduced | 3.481 |
| SRR8749032 | Uninduced | 2.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.981 |
| SRR8400027 | Control - Root | 17.529 |