Gene detail

Gene detail information of Glyur000028s00003555

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39080.1	0	vacuolar proton ATPase A3
NR	XP_004500962.1	0	PREDICTED: vacuolar proton ATPase a2-like [Cicer arietinum]
COG	NP_393486.1	3.00E-12	V-type ATP synthase subunit I [Thermoplasma acidophilum DSM 1728]
Swissprot	tr\|Q8W4S4\|VHAA3_ARATH	0	V-type proton ATPase subunit a3
trEMBL	tr\|A0A072V4D9\|A0A072V4D9_MEDTR	0	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}

Sequence

Transcript Sequence

>Glyur000028s00003555.1
ATGGAGATCAAAGAGGTGAACACAGTTGTTGGTGAAGCGGCCCGGGGCATCCACAACGAAGGAGCTGGTGGCGGCCGCTGTATTCAGATTGCTGGATTCAAATTCAGGACCGTGCCATCTCAGCCAAGCCTACGGTGCAAGAGCATATTCACACCATTCATATTCCTTCCGTGCTTGTGCATTTTGAAAATTTCGATGGATTTGCTACGTTCAGAACCTATGCAACTGGTTCAATTGATCATTCCAATCGAATCAGCTTATCGTTCCATATCTTACCTTGGTGATCTCGGCCTCTTCCAATTCAAAGATCTTAATGCAGATAAAAGCCCATTCCAACGGACTTACGCTTCTCAGGATAAACTTGCAGAACTTGAAGCCGAGCTACTCGAGATTAATGCAAATAATGAAAAGTTGCAACATACTTACAATGAGCTAGTGGAGTATAAGCTTGTTTTAGAGAAGGTTGGTGAGTTTTTCCCTTTGGCACAAAACAGTGCTGTAGCTCACCAGAGAGGGCTTGAAGTCNATACAACAGTTGACGTGTCTATTGACAGCCCATTATTATTGGAACAACAGGAGACGACAGCATATTTGTCAAAGCAGATTAAGCTGGGGTTTATCAGCGGTCTTGTTCCTAGAGAAAAATCAATTCCTTTTGAAAGAATTTTATTTCGTGGTACTAGGGGAAATGTGTTTCTTAAGCAGACNGTGGTTGACCATCCCGTTCTTGATCCTTTGTCCGGAGAGAAGGTTCATAAAAATGTATTTGTTATATTTTATTCTGGAGAGAGAGTTAAAAGTAAAATTCTCAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGATTTGGGTAAACAGTTTCAAATGATAACAGAGGTGTCAGGAAGACTTGCAGAATTGAAGACAACCATTGATGTAGGATTGCTTCACCGGAGCACTTTGTTGCAGACAATTGGATATCAATTTGAGCAATGGAGCCTTCTGTTGAAGAAGGAAAAACTCATTTATCACACTCTAAATATGCTAAGCATTAATGTGACAAAGAAATGTCTCCTTGCANAAGGTTGGTGTCCTATTTTTGCAACAAGTCAGATTCAAAAAGTATTGCAGCGGGCAACTATGGACTGTAACTCTCAAGTCGGGGCGATCTTTCAAGTTTTACAGACAAAGGAATTACCACCCACCTATTTTTGCACAAACAAGTTTACTTCTTCTTTTCAAGAAATTGTAGATGCCTATGGAATTGCCAAGTACCAGGAAGCAAATCCCGGTGTATACACAATCATTACGTTTCCATTCCTTTTTGCTGTAATGTTTGGTGATTGGGGTCACGGCATATGTTTATTACTGGCTACTTTGTATTTCATAATCAGAGAGAAAAAGTTTTCTAGTCAGAAACTTGGAGACATATTAGAAATGGCTTTCGGGGGACGATATGTTATTGTGATGATGGCNCTCTTCTCAATCTACACTGGGTTGATATATAATGAATTCTTCTCCATTCCATTCGAACTATTTGGACCATCTGCTTATGGATGTCGTGATCCTTCATGCAGGGATGCTTCTACACTGGGTTTGATAAAAGTGCGTGGCACTTACCCATTTGGCGTGGATCCTAAATGGCATGGTACTCGGAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTCTACTAGGAATATCCCAAATGAATCTTGGAATCATGTTGAGTTACTATAATGCAAAATACTTTGGNAATGACATAAATATATGGTAATAGCAAGAAATAGCTTTAGTTGNATATGGTCTCTTGTTTATCTTTGTCCTGTTTGATTTACCAATGTTGTTTCAGGCACCAATTTGTTCCCCAGATGATATTCTTAAATAGCCTATTTGGCTACCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACCTGTATCATGTGATGATATATATGTTCCTCAGTCCAATGGAAGATTTGGGTGAAAACGAGCTCTTTGTTGGCCAAAAGTCCCTTCAACTTGCGTTACTACTTTTGGCACTCGTTGCTGTACCATGGATGTTATTACCAAAGCCCTTTCTCCTNAAGAAACAACATCAAGAACGGGGATNACCCTCTTGATCAATCAGAGTCCCCTGTTAATCCCCGTGACCACGAGGAGTTTGAGTTTAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTCGGAGCTGTGTCTAATACGGCTTCATACCTACGTCTGTGGGCCCTTAGGTAGGTAGTTGAAAGCATCTGATACCTTTATGTGAATTATGGTTATAATGAAAAATTCAACATGAATATGGGCATGCTGTTTCCCCTTTGAGTATGGTAGGTGATGGCTCGATTCGGAATTTAATTTAGGGTAAGAACTATGAATTGCAATTNGTTGATGGCAAGAACTATGAATTAGTAAAGGTCCAATGGACTTTGGAATCTTGAAGAAACCAATTATGTTATGAAATGAATGTAATGTCTCTATGTTTGATTGGATCAAACCAATTATGTTTGGCCAGTTGCTAATTCTAGCAAATTTGGGCATTGTATCATGAAAGACACAGCAAAACCCAATCTATCCACTTGCTTAAATTTTATAGGCCAACAAATGCAGACTTGCCATTCAGTAAACACAACCAAAAGCGCTTTNCCCCATCTATGCATTAGTTGCATCTACTTGTTCTACAAAATGTTTGGTTCTAACTTTTGTGGACGAACCTTGAAGCTATATCTTNCCCTTTAGAAATGCATCTTTGTATGCATGATAACCTATCGTTTTAATTTTTCTTTGGTTTTTGGTCTTGTTTAGTCTAGCGCATTCAGAGTTGTCAAGCGTTTTCTATGACAAAGTTTTACTTTTGGCCTGGGGGTAAGTTTTTTTAGTTTTGTTAAGTGATGGACATTAAAAAAGTTATTTGATGTATTAAAAATCCTCTATGTTTGTGTGACTGGTGCAGGTTNAACAACACCATTGTTCTCATTGTTGGTATTATTGTTTTTATATGTGCAACTGTTGGCGTCCTATTGGTAATGGAAAGTCTAAGTGCTTTCCTGCATGCCTTGAGACTTCACTGGGTGGAGTTCCAAAACAAGTTTTACGAGGGAGATGGTTACAAGTTCTTCCCATTTTCATTTACATTACTTACTGACGAGGATGAACTGTAGTTGACAAGTACCACACGATATGCATAGATATGTCAAATTTACCTCAAGAACCTGACATGTATAGGGAGCTATTCCTATGTGTCACCTACTTGTAGTTATATATATCATGTATTTTTTTGTCACTTGTCTGTTGAAATAAGAGCATTGAAACAATGGAATATCTACCTTTCAGGTTTGTAGGCAATTGCATTTGTAATCAAAACTCAAAAGCCTACATATTAAGAGGAAAGGAAGAGTATAGTCTCCATTGGCCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	406666	414264	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015991 ATP hydrolysis coupled proton transport

cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain

molecular_function
GO:0015078 hydrogen ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003555.1	PF01496.14	V_ATPase_I	118	592	8.30E-131
Glyur000028s00003555.2	PF01496.14	V_ATPase_I	118	592	8.30E-131
Glyur000028s00003555.3	PF01496.14	V_ATPase_I	17	251	9.20E-80
Glyur000028s00003555.4	PF01496.14	V_ATPase_I	17	79	5.30E-10
Glyur000028s00003555.4	PF01496.14	V_ATPase_I	104	226	6.80E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.834
SRR1783600	control	2.822
SRR1783602	moderate drought stress	2.410
SRR1811619	moderate drought stress	2.422

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.274
DRR006520	Root Summer glycyrrhizin high producing strain	3.012
DRR006521	Root Winter glycyrrhizin high producing strain	1.022
DRR006522	Root Winter glycyrrhizin high producing strain	0.971
DRR006523	Root Summer glycyrrhizin low producing strain	1.275
DRR006524	Root Summer glycyrrhizin low producing strain	1.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.849
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.887

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.385
SRR2868004	Drought Stress (root)	1.117
SRR2967015	Control (root)	1.503

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.544
SRR9715740	Leaf	0.366
SRR9715741	Leaf	0.418
SRR9715739	Root	0.172
SRR9715742	Root	0.761
SRR9715743	Root	0.730

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.177
SRR8749028	MeJA induced 9h	2.158
SRR8749029	MeJA induced 9h	0.999
SRR8749030	Uninduced	1.176
SRR8749031	Uninduced	0.617
SRR8749032	Uninduced	0.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.516
SRR8400027	Control - Root	4.540