Gene detail

Gene detail information of Glyur000028s00003552

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75500.2	6.00E-142	Walls Are Thin 1
NR	XP_004500966.1	0	PREDICTED: protein WALLS ARE THIN 1-like [Cicer arietinum]
COG	YP_006461233.1	7.00E-07	drug/metabolite transporter superfamily permease [Solibacillus silvestris StLB046]
Swissprot	tr\|Q94AP3\|WAT1_ARATH	0	Protein WALLS ARE THIN 1
trEMBL	tr\|A0A072V2F5\|A0A072V2F5_MEDTR	0	Auxin-induced 5NG4-like protein {ECO:0000313\|EMBL:KEH36219.1}

Sequence

Transcript Sequence

>Glyur000028s00003552.1
ACCACTTCCCACTTCCCTCCCTAATTCCTTTTACTACTACTAACTAACCAAGACTACTATCTAGCTTCTATAGCTATAGCTATAGCTAGCACCATGGCTGATTCAGGCGGCTCGGCCTCTTCCAGGAGAATGTGGTGTTCCATCCCCGAACGGTTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTATGCTGGTTTCCATGTGGTTTCAAGAGCTGCCCTTAATATGGGTGTTAGCAAACTTGTTTTCCCTGTCTACCGGAATATCATCGCTTTCCTTCTGCTCCTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCTGCTCTTACTTTAAACTTCGTCTTCCAGTTCTTTCTTCTAGCCCTTGTCGGGATTACAGCAAACCAAGGTTTCTACTTGCTTGGCTTGGACAACACATCTCCAACCTTTGCATCAGCTATACAGAACTCTGTCCCAGCCATTACATTTCTCATGGCAGTCATACTAAGGCAAGATGGGATAGGGAAGGTGGCGGGAACGGTATTCTGTGTGGCGGGGGCAACCGTGATTACACTGTACAAGGGTCCAACCATATACAGCCCAGCCCCAATTCCACATCTAAACACACCACATGCAGAGTTAGAGGTGTTTGGGTCAGTGATGTCATCACTGGGAGATGCAAAGGGGAAGAACTGGACACTTGGGTGCATCTACCTCATTGGCCATTGCTTGTCTTGGTCTGGTTGGCTCGTCTTGCAAGCACCCGTCCTCAAGAAGTACCCTGCTCGCCTCTCTGTCACTTCCTACACCTGTTTCTTTGGACTCATCCAATTCCTCCTCGTTGCTTTGATCTTTGAAAGNGATGCCCAGGCTTGGATCTTCCAATCCGGTGGAGAAGTCTTCACTATTTTGTACGCGGGAGTGGTGGCATCCGGAATTGCCTTCGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTGTTCGTTGCGGTGTATCAACCTGTTCAGACTCTTGCTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCNTTGGGGCAGTGTTGATCGTTGTGGGACTGTACCTAGTCTTGTGGGGTAAAAGTGAAGAGAAGAAGTTTGCAAGGGAACAACAAGCTGCGATTACTTCCACTACTCCAGAGCATAGTAGCATCATCAGGCCCGCAAGCCATGCCAAAACATCACTTACTCAGCCCCTTCTCCCTTCATCAACGGAAAATAATGTCTGATCAACAAAACCTTNAGTACTTCAAGCTGGTGGAGCATAAAAGGGAACATCAGAAGAAGAAGTAGAAAATGATACCAGTTATACATTACTAGTACTTTATATGTCAGGAAGCTTGTGTGTGTATGATGAATATGGGGTTTGATCGTGATCTTGTTCTTCTGCTTTTGTTTATGGTTAATTCNAATGCTAGAATGAGGCTTTTTTTTTATGGGAATGATTATAATGATAGGTGTCACTTGAAAGTGGGCTTATAGAGCCTGAAAAAATCCCATTATGCTTTATATGTTAATTAATTAATGGTTTGATTTACAAAAGGATGTTATTAATTTAAGCTGGCTAGGCTAGCTATATGGTCACTGTAATGCTAGAGATCATTATGACACAGATGGGGATGGTAACAGAGACCCACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	384904	388505	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003552.1	PF00892.15	EamA	35	156	2.60E-12
Glyur000028s00003552.1	PF00892.15	EamA	209	337	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.733
SRR1783600	control	39.264
SRR1783602	moderate drought stress	49.783
SRR1811619	moderate drought stress	49.341

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.750
DRR006520	Root Summer glycyrrhizin high producing strain	43.950
DRR006521	Root Winter glycyrrhizin high producing strain	1.429
DRR006522	Root Winter glycyrrhizin high producing strain	1.495
DRR006523	Root Summer glycyrrhizin low producing strain	42.799
DRR006524	Root Summer glycyrrhizin low producing strain	42.647
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.213

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	184.235
SRR2868004	Drought Stress (root)	258.913
SRR2967015	Control (root)	272.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.195
SRR9715740	Leaf	8.538
SRR9715741	Leaf	10.550
SRR9715739	Root	51.871
SRR9715742	Root	71.509
SRR9715743	Root	59.431

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	149.308
SRR8400027	Control - Root	130.500