Gene detail

Gene detail information of Glyur000028s00003549

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27190.1	0	purple acid phosphatase 12
NR	NP_001239689.1	0	uncharacterized protein LOC100794124 [Glycine max]
COG	YP_554885.1	1.00E-15	metallophosphoesterase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q9SDZ9\|PPAF2_IPOBA	0	Purple acid phosphatase 2 (Precursor)
trEMBL	tr\|K7KSQ8\|K7KSQ8_SOYBN	0	Purple acid phosphatase {ECO:0000256\|RuleBase:RU361203}

Sequence

Transcript Sequence

>Glyur000028s00003549.1
CGAACGGCCACCAGTCTCGTCTCTTGTCATCCATTATGAAATTGAGGTTTAGTGAGCGGCGCGTGGCACAAGCATATTCCAACCCACTTTGATATGAATATTCCTTCAGTCCCCCACGCCAATCTGCGCTGCTAATAAATCTTATTGTAGTAACTAACTTATGACTATGCAATTGGATCATAAAAATTGTAGTGGCTTAGTAGTAACTGGGTGGGATTGATTCGAATTAACAGAAAAGAGATGGGATTCAATTGGAATGGAGACAGAGGGGTTGGGTGTGCTCTTCTACTTCTAGCCTCGGTTCTTATTTTCATCATCACTGATGAGGAGGAGGCATGTTTCTGTATGGGTGGAAAGACCAGTGCTTTTGTGAGAAATGATTATTTGTCGTTGGATATGCCATTAGACAGTGACGTGTTCCGCGTGCCTCCCGGTTACAATGCTCCTCAGCAGGTGCATATAACACAAGGAGATCATGTGGGGAAGGGTGTGATCATCTCCTGGGTTACCCCAGATGAACCGGGTTCAAGTACCGTGATTTACTGGGCGGAAGGCAGCGAATTCAACTGGCAAGCTCATGGCTTTTTCCTCACCTACAAATACTTCAATTACACCTCTGGTTACATTCATCACTGCACTATTCACAACTTGGAGTTTGACACCAAATACTACTATGAGGTCGGAATTGGGAATACCACTCGACAGTTCTGGTTTAAAACTCCTCCCCCGGTTGGCCCGGATGTTCCTTACACATTTGGTCTCATTGGGGATCTAGGCCAAACTTATAATTCCAACACCACACTTACTCATTATGAATTAAGCCCGGCGAAAGGCCAGACAATACTGTATGTGGGGGATCTCTCTTATGCNGATGACTATCCATTTCATGACAATACCAGGTGGGATACATGGGGAAGATTCACTGAGAGAGTTGCTGCTTATCAGCCTTGGATTTGGACTGCAGGGAATCATGAAATTGATTTTGCTCCAAAACTTGGTGAAACTAGACCATTCAAGCCTTATACTTCTCGTTATCATGTACCATACAGAGCATCGGATAGTACATCTCCATTGTGGTATTCTATCAAGAGAGCTTCAGCATACATCATTGTTTTGTCTTCTTACTCGGCATTTGGTAAATACACTCCTCAATACAAATGGCTTGAAAAGGAGCTACCCAAGGTGAACAGGACAGAGACACCATGGCTGATAATTCTCATCCATTGTCCAATATATAGTAGTTATGTGAATCACTACATGGAAGGGGAAACAGTTAGAGTAATGTATGANAAGTGGTTTGTGGAGTATAAAGTGGATGTTGTATTTGCAGGTCATGTTCATGCTTATGAACGATCTGTAAGTTCTCCATTTCTCATTGTCCTTCACATTGCATGTATTTGTTATGTCACAAGCACGTATATTCATTGCATCTATAGACTACAGGATGAACGTGTNTCAAATATTGCATATAATATTGTGAACGGGCTGTGCAGACCCATCAATGACCAATCTGCCCCAGTTTACATAACGATTGGAGATGGAGGAAATTTAGAAGGACTGGCTACTGCTATGACACAGCCCCAGCCAAGCTACTCAGCATACCGTGAAGCCAGTTTCGGCCATGGGATTCTTGATATAAAGAACAGAACACATGCCCATTTTGGTTGGAATCGTAATCAAGATGGATATGCAGTGGATTCTGATTCTTTATGGCTGCACAATAGATACTGGAGCCACCCAGAAGAAGCATCTCTTGCTGCATTTCGGTAGAATAATTTAGTAGAACAAGTGTGGAATTAGTTGATGAGGTGTGAACCACCTAAAATCTCTCTCTGGTTCCAAATGTGAAACGTGTTCCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	374062	377318	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003993 acid phosphatase activity

GO:0005515 protein binding

GO:0016787 hydrolase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003549.1	PF00149.23	Metallophos	171	369	6.00E-26
Glyur000028s00003549.1	PF14008.1	Metallophos_C	424	487	2.90E-21
Glyur000028s00003549.2	PF00149.23	Metallophos	171	369	5.30E-26
Glyur000028s00003549.2	PF14008.1	Metallophos_C	394	457	2.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.550
SRR1783600	control	1.507
SRR1783602	moderate drought stress	0.910
SRR1811619	moderate drought stress	0.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.740
DRR006520	Root Summer glycyrrhizin high producing strain	2.613
DRR006521	Root Winter glycyrrhizin high producing strain	0.119
DRR006522	Root Winter glycyrrhizin high producing strain	0.102
DRR006523	Root Summer glycyrrhizin low producing strain	5.646
DRR006524	Root Summer glycyrrhizin low producing strain	5.865
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.911
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.772

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.971
SRR2868004	Drought Stress (root)	2.930
SRR2967015	Control (root)	4.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.337
SRR9715740	Leaf	11.942
SRR9715741	Leaf	5.286
SRR9715739	Root	1.251
SRR9715742	Root	0.629
SRR9715743	Root	0.964

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.207
SRR8749028	MeJA induced 9h	0.414
SRR8749029	MeJA induced 9h	0.220
SRR8749030	Uninduced	0.068
SRR8749031	Uninduced	0.072
SRR8749032	Uninduced	0.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.543
SRR8400027	Control - Root	3.730