Gene detail information of Glyur000028s00003544 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75460.1 | 7.00E-96 | ATP-dependent protease La (LON) domain protein |
| NR | XP_007136040.1 | 3.03E-159 | hypothetical protein PHAVU_009G012900g [Phaseolus vulgaris] |
| COG | YP_007094034.1 | 2.00E-58 | peptidase S16 lon domain-containing protein [Chroococcidiopsis thermalis PCC 7203] |
| trEMBL | tr|V7AR34|V7AR34_PHAVU | 1.00E-159 | Uncharacterized protein {ECO:0000313|EMBL:ESW08034.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 346740 | 347636 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003544.1 | PF02190.11 | LON | 80 | 268 | 5.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.302 |
| SRR1783600 | control | 30.989 |
| SRR1783602 | moderate drought stress | 31.016 |
| SRR1811619 | moderate drought stress | 31.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.987 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.379 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.210 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 208.376 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 206.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.860 |
| SRR2868004 | Drought Stress (root) | 21.500 |
| SRR2967015 | Control (root) | 23.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 209.367 |
| SRR9715740 | Leaf | 242.704 |
| SRR9715741 | Leaf | 184.198 |
| SRR9715739 | Root | 34.821 |
| SRR9715742 | Root | 28.105 |
| SRR9715743 | Root | 29.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.209 |
| SRR8749028 | MeJA induced 9h | 34.630 |
| SRR8749029 | MeJA induced 9h | 22.438 |
| SRR8749030 | Uninduced | 2.291 |
| SRR8749031 | Uninduced | 0.162 |
| SRR8749032 | Uninduced | 1.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.723 |
| SRR8400027 | Control - Root | 28.550 |