Gene detail

Gene detail information of Glyur000028s00003542

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51030.1	3.00E-42	thioredoxin H-type 1
NR	AEI69284.1	3.92E-59	thioredoxin h 1-2 [Galega orientalis]
COG	YP_004896337.1	3.00E-19	thioredoxin [Acidaminococcus intestini RyC-MR95]
Swissprot	tr\|Q43636\|TRXH_RICCO	1.00E-58	Thioredoxin H-type
trEMBL	tr\|F8S298\|F8S298_9FABA	1.00E-59	Thioredoxin {ECO:0000256\|PIRNR:PIRNR000077}

Sequence

Transcript Sequence

>Glyur000028s00003542.1
GTTTTTTTGTTAGTGTGATTCGATCTTATATAAGACGGAGGGGGGCATCCCTTTCGGGTTCAAAGCTAAAGCAAAGCGAAAAGGATTTGAAGGCAAAGCGCAATCGTCGGTGGTCGAGTGAGAAAGAGGAGAATGGCGGAAGAGGGACAAGTGATCGGTGTCCACAGCGTGGAGGCGTGGAACGAACTGATGCAGAAGGGGAATGAGTCCAAGAAACTGATTGTAGTTGATTTTACTGCTTCTTGGTGTGGCCCATGCCGTTTCATTGCCCCAATTCTAGCAGAGATTGCTAAAAAGCTGCCGGATGTCACCTTCCTTAAGGTTGATGTGGATGAACTGAAGACTGTTTCTGAGGAGTGGGGTATTGAAGCTATGCCAACCTTCCTGTTCTTGAAAGAAGGCAAACTAGTGGACAAGACTGTTTCTGAGGAGTGGGGTATTGAAGCTATGCCAACCTTCCTGTTCTTGAAAGAAGGCAAACTAGTGGACAAGGTTGTTGGTGCCAAGAAGGAGGAGCTGCAACTGACAATATCCAAGCATGCAACTGCTGCTGCTTGAAGTGTCATATGAATAAAAGATTATCTATTTCGAGTCGGTTTGCATTTTACTATTTTTGATTCAGTTTGCATGATTTCAGTGTGGTTTGGAATCTGTGTAACATGGGTGAATACTTGAATAAGATCGTTGCACTGTAGTACTTAAAAACACTTTTTTGCTAAGGAAACTTAGCAATAACATAGCATTTATGAAAATATTTAGCTCTGTGCGTTATGTACTTACCATTGCTGTGGCATTATGAACTGCCATTCTTTGCTCAAAACCAGTAGCAGGGTAATCATTTTACTAGCATTTTTTGGACGGAAAAGAACACCTCGCCCTGCCGAAAATCCGCCCGTGATGGGAATGAGTTGTTTTTGGTTTGTATCTCTCTTCATAAATTTTGACAGGGTTTTATCTCTCTGATATTTATGAAGAGAAAATAAATATAAAAGTTTAACATGATATGGTTGTGTGGAAAATTTTAACGTCAGAATGATTTATTCTTCACTCAGGATTGTTTCCTTGGATGGATGATGGATCGTGTACTTGTTAACTTAAGAGAATAAATCACACATCATATCTAGTCTAGATTATTACGTTGGGGTGACAGCTATAACATTTAAAACTTACCAAGCACCAGGAACAGGGACCCGGATTGTCTGCAGTTGGCAATTCCGTGCAGTCAGCGCAATAATAACCGTCAGATCAAGATCGGTCGACTCACGATTTATCCTTAGTTTTATTCAGATTTTAAACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	341824	345566	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003542.1	PF00085.15	Thioredoxin	10	97	1.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.784
SRR1783600	control	117.095
SRR1783602	moderate drought stress	52.834
SRR1811619	moderate drought stress	50.767

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	202.908
DRR006520	Root Summer glycyrrhizin high producing strain	197.280
DRR006521	Root Winter glycyrrhizin high producing strain	236.314
DRR006522	Root Winter glycyrrhizin high producing strain	230.607
DRR006523	Root Summer glycyrrhizin low producing strain	160.107
DRR006524	Root Summer glycyrrhizin low producing strain	158.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	212.793
DRR006526	Leaf Summer glycyrrhizin high producing strain	209.824

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	584.168
SRR2868004	Drought Stress (root)	527.925
SRR2967015	Control (root)	499.637

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	788.032
SRR9715740	Leaf	660.670
SRR9715741	Leaf	736.616
SRR9715739	Root	158.788
SRR9715742	Root	256.754
SRR9715743	Root	243.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	300.758
SRR8749028	MeJA induced 9h	251.100
SRR8749029	MeJA induced 9h	371.141
SRR8749030	Uninduced	281.515
SRR8749031	Uninduced	300.254
SRR8749032	Uninduced	279.652

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	557.937
SRR8400027	Control - Root	565.429