Gene detail

Gene detail information of Glyur000028s00003541

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36360.2	0	beta-galactosidase 3
NR	KEH36209.1	0	beta-galactosidase-like protein [Medicago truncatula]
COG	YP_003380010.1	2.00E-54	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9SCV9\|BGAL3_ARATH	0	Beta-galactosidase 3 (Precursor)
trEMBL	tr\|A0A072V2E3\|A0A072V2E3_MEDTR	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000028s00003541.1
ATGGACACTCCTTCAGCTTCAAAGCTACTACTAGTGTTTTTTGTTTTGTTTGTGGGATGTTGTGAANTGATTCACTGCAATGTCACGTACGATAGAAAAGCCCTTCTTATCAATGGCCAAAGGAGAGTCCTAATCTCTGGCTCCATTCACTATCCCAGAAGCACCCCTGAAATGTGGGAGGATCTAATTCGGAAGGCCAAACACGGAGGTCTTGATGTCATAGACACTTATGTCTTTTGGAATGTCCACGAACCTTCTCCTGGCAATTACAATTTTGAAGGACGGTATGATCTAGTGCGGTTCATTAAGACAGTGCAAAAGGTGGGGCTTTATGCCAATCTTCGCATTGGACCTTATGTATGTGCTGAGTGGAACTTTGGAGGACTTCCTGTTTGGTTGAAGTATGTTCCTGGCATAAGCTTCAGAACGGATAATGGGCCTTTCAAGGCGGCAATGCAAGGTTTTACCCAGAAAATTGTCCAGAAGATGAAGAGTGAAAAGTTGTTTCAATCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAACGAGTATGGACCAGAAAGCAGGGCAATGGGAGCTTCTGGTCATGCATACATAAAGTGGGCTGCAAATATGGCTGTTGGATTGGGAACAGGAGTCCCTTGGGTGATGTGCAAAGAAAATGATGCCCCAGATCCTGTGATAAATTCATGTAATGGTTTTTACTGTGACGATTTCTCTCCAAATAAACCATACAAGCCTAGCATGTGGACNGAGTCTTGGAGTGGCTGGTTTACAGATTTTGGCGGCCCAATTCACCAGCGACCAGTTCAGGATCTAGCATTTGCAGTTGCTCGTTTCATACAAAATGGTGGCTCATATGTGAATTACTACATGTACCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGTCCATTCATCACTACAAGCTATGACTATGATGCTCCAATCGATGAATATGGTTTGATCAGGCAACCAAAATATAGTCATTTGAAGGAGCTACATAAAGCTATCAAGCAATGTGAGCATGCTTTGGTTTCTTCAGACCCTACTGTTACATCATTAGGAGCATTGCAGCAGGCTCATGTATTCTCTTCAAGGACTGGAGGATGTGCAGCTTTTCTGGCAAACTATCATGCACAGTCTGCTGCTAGGGTGATGTTCAATAACAGGCCCTATGACTTGCCTGCTTGGTCCATAAGCATCCTTCCTGATTGCAGAACTGACGTAAGTGTTCAAACTTCATTGGTACAAATGCTTCCTGTCAATTCTAAGTTCTCATGGGAGACCTATGATGAAGATCTATCCTCTCTGGCTGAAAGTTCAAGGATTACAGCTGCTGGACTCTTAGACCAGTTGAACGTTACCAGAGACACCAGTGACTATCTATGGTACATAACCAGCGTTGACATAAGTTCATCAGAGTCATTTCTTCGAGGAGGACACAAGCCCAGCATTAATGTGCAGTCTGCAGGACATGCCGTCCACGTGTTTGTTAATGGGCAACTTTCAGGGTCGGCTTTTGGGACAAGGAAACAGAGAAGTTGCACTTTTGATGGGCCAATCAACCTACATGTCGGAACAAATAAAATTGCACTTCTCAGCGTGACTGTTGGATTACCAAACGTTGGCCGGCATTATGAAACATGGAAGACAGGGATCACAGGTCCAGTATTGCTCCATGGTCTTGACCATGGACAGAAAGATTTGTCGTGGAATAAATGGNCATATCAGGTTGGCCTAAAAGGAGAGGTTATGAATTTGGTGTCTAACAATGGGGTCTCATCTGTTGATTGGGTCCAAGAGTCACTAGCTACCCAAAGCCGGTCAGAATTGAAATGGCACAAGGCTTATTTTAACGCACCTGAGGGAAACGAACCATTGGCTTTGGACCTGGGAAGTATGGGTAAGGGCCAAGTATGGATCAATGGGCAGAGCATAGGAAGATATTGGATGGCTTATGCAAAGGGTGACTGTAATTCTTGCAGCTATTCTGGGACATTCCGACCTGTAAAGTGCCAACTTGGTTGTGGACAACCCACTCAACGATGGTATCACGTTCCCAGGTCCTGGCTAAAGCCAACAAAGAACCTGATAGTAGTGTTTGAAGAACTAGGCGGAAATCCTTGGAAAATATCTATGGTAAAGAGAACGGTACATACTGCAGCAGTCCGTGAGTAGTGGAAGCCACAATTCAGAGAACTAAAGAACCTGAAGANGAAATTGTATGTTCGTTCACTTGTGAATTTCTCTGGCTTCCGTTGGCATTGCTTGAAACGAGGGAAGATTTGAAGCAATAGGCTATCATCCTAACTTGGAATAAGTCAGATTCAGTTTGTACGTGGCTTGGTTCTACCGTTCAAGGAGGAGGGTAGTTAGGTGTGTTATCCCGAATTATGTGGTCTCCCCCTCTTCTCGATCTTGCATCAAAATGGTCAAATGGCCAACCGTCACTTGTACGAAAGATGTAAGCCAAGATGATTTGTAATTTATTCTTTTCGTCGGAAGAGATAGAGAGATAATTACAATCATAAGACGGGTGCCTTCTTTCATTTTTTCTTTCTAATAATTTGTCTGTGTCTGTGGTTGCCATTTAATCGTCAAAATATCATTAGTTTCAATCACTTGATTCAGGCTGAGCGGTTTAAACGTGATCCTCACATTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	336410	341603	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003541.1	PF01301.14	Glyco_hydro_35	35	339	4.00E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.573
SRR1783600	control	3.536
SRR1783602	moderate drought stress	2.692
SRR1811619	moderate drought stress	2.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.079
DRR006520	Root Summer glycyrrhizin high producing strain	9.986
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.739
DRR006524	Root Summer glycyrrhizin low producing strain	2.716
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.016

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.362
SRR2868004	Drought Stress (root)	5.186
SRR2967015	Control (root)	8.965

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.616
SRR9715740	Leaf	0.161
SRR9715741	Leaf	0.748
SRR9715739	Root	3.232
SRR9715742	Root	2.219
SRR9715743	Root	3.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.506
SRR8749028	MeJA induced 9h	0.190
SRR8749029	MeJA induced 9h	0.411
SRR8749030	Uninduced	0.058
SRR8749031	Uninduced	0.256
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.844
SRR8400027	Control - Root	15.262