Gene detail information of Glyur000028s00003534 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43010.1 | 0 | regulatory particle triple-A ATPase 4A |
| NR | XP_010110022.1 | 0 | 26S protease regulatory subunit S10B-B-like protein [Morus notabilis] |
| COG | NP_275871.1 | 7.00E-100 | proteasome-activating nucleotidase [Methanothermobacter thermautotrophicus str. Delta H] |
| Swissprot | tr|Q9SEI3|PS10A_ARATH | 0 | 26S protease regulatory subunit 10B homolog A |
| trEMBL | tr|W9SC07|W9SC07_9ROSA | 0 | 26S protease regulatory subunit S10B-B-like protein {ECO:0000313|EMBL:EXC25040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 285042 | 289308 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003534.1 | PF00004.24 | AAA | 175 | 279 | 4.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.095 |
| SRR1783600 | control | 30.695 |
| SRR1783602 | moderate drought stress | 23.610 |
| SRR1811619 | moderate drought stress | 23.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.691 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.660 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 67.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.484 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.796 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 151.142 |
| SRR2868004 | Drought Stress (root) | 129.332 |
| SRR2967015 | Control (root) | 121.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.159 |
| SRR9715740 | Leaf | 74.603 |
| SRR9715741 | Leaf | 81.247 |
| SRR9715739 | Root | 28.403 |
| SRR9715742 | Root | 62.429 |
| SRR9715743 | Root | 51.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 120.874 |
| SRR8749028 | MeJA induced 9h | 132.077 |
| SRR8749029 | MeJA induced 9h | 119.748 |
| SRR8749030 | Uninduced | 83.208 |
| SRR8749031 | Uninduced | 117.433 |
| SRR8749032 | Uninduced | 106.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 104.247 |
| SRR8400027 | Control - Root | 103.937 |