Gene detail information of Glyur000028s00003526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27620.1 | 1.00E-159 | HXXXD-type acyl-transferase family protein |
| NR | KEH36187.1 | 0 | omega-hydroxypalmitate O-feruloyl transferase [Medicago truncatula] |
| Swissprot | tr|Q94CD1|HHT1_ARATH | 7.00E-69 | Omega-hydroxypalmitate O-feruloyl transferase |
| trEMBL | tr|A0A072V2V4|A0A072V2V4_MEDTR | 0 | Omega-hydroxypalmitate O-feruloyl transferase {ECO:0000313|EMBL:KEH36187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 248331 | 250774 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003526.1 | PF02458.10 | Transferase | 22 | 437 | 1.80E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.789 |
| SRR1783600 | control | 8.763 |
| SRR1783602 | moderate drought stress | 11.506 |
| SRR1811619 | moderate drought stress | 11.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.341 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.108 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.212 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.328 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.158 |
| SRR2868004 | Drought Stress (root) | 30.639 |
| SRR2967015 | Control (root) | 43.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.371 |
| SRR9715740 | Leaf | 0.448 |
| SRR9715741 | Leaf | 0.805 |
| SRR9715739 | Root | 3.333 |
| SRR9715742 | Root | 11.636 |
| SRR9715743 | Root | 9.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.204 |
| SRR8749028 | MeJA induced 9h | 0.096 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.045 |
| SRR8749031 | Uninduced | 0.148 |
| SRR8749032 | Uninduced | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.722 |
| SRR8400027 | Control - Root | 6.226 |