Gene detail information of Glyur000028s00003524 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75380.3 | 6.00E-74 | bifunctional nuclease in basal defense response 1 |
| NR | KHN12686.1 | 1.83E-116 | hypothetical protein glysoja_008649 [Glycine soja] |
| Swissprot | tr|Q9FWS6|BBD1_ARATH | 5.00E-97 | Bifunctional nuclease 1 |
| trEMBL | tr|K7M5E0|K7M5E0_SOYBN | 5.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G07830.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 224953 | 226676 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003524.1 | PF02577.9 | DNase-RNase | 140 | 218 | 1.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.301 |
| SRR1783600 | control | 12.125 |
| SRR1783602 | moderate drought stress | 14.008 |
| SRR1811619 | moderate drought stress | 13.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.646 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.830 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.526 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.778 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 80.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.407 |
| SRR2868004 | Drought Stress (root) | 17.493 |
| SRR2967015 | Control (root) | 38.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.372 |
| SRR9715740 | Leaf | 64.577 |
| SRR9715741 | Leaf | 39.670 |
| SRR9715739 | Root | 6.271 |
| SRR9715742 | Root | 6.508 |
| SRR9715743 | Root | 6.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.537 |
| SRR8749028 | MeJA induced 9h | 28.343 |
| SRR8749029 | MeJA induced 9h | 14.766 |
| SRR8749030 | Uninduced | 9.756 |
| SRR8749031 | Uninduced | 83.947 |
| SRR8749032 | Uninduced | 31.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.572 |
| SRR8400027 | Control - Root | 16.914 |