Gene detail information of Glyur000028s00003523 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21520.1 | 0 | Sec14p-like phosphatidylinositol transfer family protein |
| NR | KHN22234.1 | 0 | Sec14 cytosolic factor, partial [Glycine soja] |
| Swissprot | tr|F4IHJ0|SFH8_ARATH | 0 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 |
| trEMBL | tr|I1K7Q1|I1K7Q1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 214666 | 219071 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003523.1 | PF03765.10 | CRAL_TRIO_N | 79 | 112 | 1.60E-07 |
| Glyur000028s00003523.1 | PF00650.15 | CRAL_TRIO | 137 | 302 | 2.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.272 |
| SRR1783600 | control | 2.278 |
| SRR1783602 | moderate drought stress | 4.802 |
| SRR1811619 | moderate drought stress | 4.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.563 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.274 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 156.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 151.897 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.737 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.635 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.507 |
| SRR2868004 | Drought Stress (root) | 28.403 |
| SRR2967015 | Control (root) | 27.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.998 |
| SRR9715740 | Leaf | 64.667 |
| SRR9715741 | Leaf | 68.616 |
| SRR9715739 | Root | 1.885 |
| SRR9715742 | Root | 7.280 |
| SRR9715743 | Root | 5.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.605 |
| SRR8749028 | MeJA induced 9h | 12.206 |
| SRR8749029 | MeJA induced 9h | 5.241 |
| SRR8749030 | Uninduced | 7.309 |
| SRR8749031 | Uninduced | 12.247 |
| SRR8749032 | Uninduced | 6.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.360 |
| SRR8400027 | Control - Root | 17.852 |