Gene detail information of Glyur000028s00003520 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26540.1 | 1.00E-11 | uroporphyrinogen-III synthase family protein |
| NR | XP_004501590.1 | 2.57E-20 | PREDICTED: uroporphyrinogen-III synthase, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|O48721|HEM4_ARATH | 6.00E-13 | Uroporphyrinogen-III synthase, chloroplastic (Precursor) |
| trEMBL | tr|A0A072V310|A0A072V310_MEDTR | 4.00E-20 | Uroporphyrinogen III synthase {ECO:0000313|EMBL:KEH35743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 203558 | 206712 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003520.1 | PF00031.16 | Cystatin | 73 | 125 | 2.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.532 |
| SRR1783600 | control | 6.712 |
| SRR1783602 | moderate drought stress | 6.274 |
| SRR1811619 | moderate drought stress | 5.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.666 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.722 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.511 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.727 |
| SRR2868004 | Drought Stress (root) | 13.256 |
| SRR2967015 | Control (root) | 13.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.481 |
| SRR9715740 | Leaf | 4.567 |
| SRR9715741 | Leaf | 6.776 |
| SRR9715739 | Root | 6.677 |
| SRR9715742 | Root | 7.918 |
| SRR9715743 | Root | 6.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.483 |
| SRR8749028 | MeJA induced 9h | 4.773 |
| SRR8749029 | MeJA induced 9h | 0.755 |
| SRR8749030 | Uninduced | 0.937 |
| SRR8749031 | Uninduced | 0.689 |
| SRR8749032 | Uninduced | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.442 |
| SRR8400027 | Control - Root | 12.369 |