Gene detail information of Glyur000028s00003514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15770.1 | 1.00E-86 | RNA binding |
| NR | XP_004500996.1 | 1.24E-131 | PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cicer arietinum] |
| COG | NP_068899.1 | 2.00E-06 | hypothetical protein AF0058 [Archaeoglobus fulgidus DSM 4304] |
| trEMBL | tr|V7CA90|V7CA90_PHAVU | 1.00E-131 | 60S ribosome subunit biogenesis protein NIP7 homolog {ECO:0000256|PIRNR:PIRNR017190} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 176859 | 177422 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003514.1 | PF03657.8 | UPF0113 | 49 | 182 | 4.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.230 |
| SRR1783600 | control | 71.387 |
| SRR1783602 | moderate drought stress | 82.584 |
| SRR1811619 | moderate drought stress | 82.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 118.615 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 118.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 88.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 86.454 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 125.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 123.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 65.556 |
| SRR2868004 | Drought Stress (root) | 42.630 |
| SRR2967015 | Control (root) | 42.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.843 |
| SRR9715740 | Leaf | 35.040 |
| SRR9715741 | Leaf | 16.145 |
| SRR9715739 | Root | 62.653 |
| SRR9715742 | Root | 55.303 |
| SRR9715743 | Root | 54.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 187.498 |
| SRR8749028 | MeJA induced 9h | 58.611 |
| SRR8749029 | MeJA induced 9h | 102.598 |
| SRR8749030 | Uninduced | 14.614 |
| SRR8749031 | Uninduced | 3.660 |
| SRR8749032 | Uninduced | 14.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 59.598 |
| SRR8400027 | Control - Root | 35.743 |