Gene detail

Gene detail information of Glyur000028s00003510.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75330.1	5.00E-153	ornithine carbamoyltransferase
NR	AFK40064.1	0	unknown [Lotus japonicus]
COG	YP_001997178.1	5.00E-107	ornithine carbamoyltransferase [Chloroherpeton thalassium ATCC 35110]
Swissprot	tr\|Q43814\|OTC_PEA	0	Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBL	tr\|I3SIH2\|I3SIH2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40064.1}

Sequence

Transcript Sequence

>Glyur000028s00003510.1
CGCAAGAGAAAACTTTATTCTCCTGCGGAGTATTAGCGAGAAAGTGAACTACTGAAAAGAAAGAACAAGCAGCAGCAAGTGTCGCCGGTGAGTGTAGGGTGAAGAAATGGGTGTGATCTCTGGTCACTGTTACTGCACCGTTGGATCCTTTCTCTCTCCTCACAATCCCAATCGCCGCCATTCCTCTCCTTCTCTCTCTCCCATTTCNATTTCTTCTCGACTCAGAATATCATGCCTCGCCTCTCCCGCTGTTTCCGCCGAATCTCCCGTCACTGCGAAAGTTGGGATGAAAGATTTTCTTCACATTGATGATTTCGATAAGGACACTATTCTGAAGATGTTAGATCGAGCCATTGAGGTGAAGGCGCTGCTAAAATCAGGGGACAGGACATTTCGACCTTTTGAAGGGAAGACAATGTCGATGATATTTGCTAAGCCGTCCATGAGAACGAGGGTTTCGTTTGAGACTGGCTTTACACTGTTGGGTGGCCATGCTGTTTATTTAGGACCCGATGACATCCAAATGGGCAAGCGAGAGGAGACTCGCGATGTTGCTCGTGTTCTGTCTCGCTATAATGANATCATCATGGCTCGTGTTTTTGCTCATCAGGACATACTTGATCTTGCAAAGTATGCAATTGTGCCAGTCATCAATGGNTTGACAGACTACAATCATCCCTGCCAGATAATGGCTGATGCCCTTACTATGATTGAGCACATTGGTCGGTTTGAAGGTACCAAGGTCGTNTACGTTGGAGATGGAAATAATATTGTTCACTCATGGTTATTGATGGCATCTGTAATTCCTTTTCACTTCGTTTGTGCGTGTCCAAAAGGTTTTGAACCNGATGCAAAAACAGTTGAGAAGGCAAGGAAGGCGGGAATCAGCAAGATTGAGATAACNAATGATCCCAAAGAAGCTGTTAGGGGAGCGGATGTTGTGTATTCGGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGCATATCGCCGNGAAGTGTTTAAAGGATTTCAGGTGGACCAAAGTCTTATGGATGTGGCTGGTTCAAAGGCATTTTTCATGCATTGCTTACCAGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTGTTGAAGCTCCATATTCAATAGTCTTCCCGCAAGCTGAGAATCGAATGCATGCACAGAATGCCATTATGCTTCATGTACTCGGCAAGTAGTTGATTAAATCATGATCTTGGTTTTAGCCATATCGGTGTGCCCTTGCAATAGTTGGTTTCGGGCTTTCGGCAGCATGTTCGATCTAAATTATGAAGTTGGAATTTGAGTTGCGTTTGTATTATTAGTAGCCACTGAAGAACAGCTGAATCATATGAAAATGCTAGCATCAAGTTTCCTTTTCCTATTATACGCTATCACAGCGTATTTCATTTTGATTTTGAGGCATGTGATGTGACGAGTCTCAAGTACAAATTTCAAGAGAAGGATCAATTTTCCAAGGAAGAAATTTAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	161222	164438	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00611	OTC, argF, argI	EC:2.1.3.3	Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0006591 ornithine metabolic process

molecular_function

GO:0004585 ornithine carbamoyltransferase activity

GO:0016597 amino acid binding

GO:0016743 carboxyl- or carbamoyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003510.1	PF02729.16	OTCace_N	62	204	3.60E-44
Glyur000028s00003510.1	PF00185.19	OTCace	209	360	3.40E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	118.890
SRR1783600	control	119.716
SRR1783602	moderate drought stress	62.176
SRR1811619	moderate drought stress	61.778

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.313
DRR006520	Root Summer glycyrrhizin high producing strain	104.164
DRR006521	Root Winter glycyrrhizin high producing strain	27.652
DRR006522	Root Winter glycyrrhizin high producing strain	26.757
DRR006523	Root Summer glycyrrhizin low producing strain	63.964
DRR006524	Root Summer glycyrrhizin low producing strain	63.627
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	95.932
SRR2868004	Drought Stress (root)	50.598
SRR2967015	Control (root)	48.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.216
SRR9715740	Leaf	43.107
SRR9715741	Leaf	30.489
SRR9715739	Root	74.798
SRR9715742	Root	73.883
SRR9715743	Root	71.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.153
SRR8749028	MeJA induced 9h	48.430
SRR8749029	MeJA induced 9h	44.507
SRR8749030	Uninduced	8.433
SRR8749031	Uninduced	3.416
SRR8749032	Uninduced	6.807

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	104.144
SRR8400027	Control - Root	94.950