Gene detail

Gene detail information of Glyur000028s00003507

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19600.1	1.00E-139	pfkB-like carbohydrate kinase family protein
NR	XP_007136614.1	0	hypothetical protein PHAVU_009G059500g [Phaseolus vulgaris]
COG	NP_811711.1	5.00E-46	PfkB family carbohydrate kinase [Bacteroides thetaiotaomicron VPI-5482]
Swissprot	tr\|Q9LZG0\|ADK2_ARATH	7.00E-12	Adenosine kinase 2
trEMBL	tr\|V7AVI3\|V7AVI3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08608.1}

Sequence

Transcript Sequence

>Glyur000028s00003507.1
GTAGTTTCAATAATGCAAGGAATTTGTTCCGATTTGTATGGAATGGAGGTCAAGGGGAAAAAGACAAGGGGGTAAGGTGTAGTCGAGCGCCTTTAAGGCGCAAATAACGGGAGGGTTTGCGGCGTGTTCGCCGTTCACGCACTCACTCACTCACTCACTCGCAGAGGATCGACCGAATCTGCTTCTTCTGGTGAGAGTGAGGCTGAGAAGCAGCAAGTGATGGGAGCCGAAAGCTTCTGTAAGAAGCAAAACGAGCAAGTGGAAGTGGAAGTGGCGGAAGCAGAAGCAGAAGCTCCCTTCATTTTGGGTCTCCAGCCCTCTGCCCTCGTTGACAACGTGGCCCACGCTGATTGGTCCTTGCTCGATCAAATCCCCGGCGAACGCGGTGGCTCCATCCCCGTTGCAATTGAAGAGCTTGAATGTATACTAAAGGAGGTTATTGAATCTAAATCTAAATATGAATCCCGTGACGCTGATTCTCATTCTCCCATGAAGACTATGGCTGGTGGCAGTGTTGCCAACACAATTAGGGGTCTGAGTAGTGGTTTTGGGATTTCGAGTGGGATAATTGGGGCGTNTGGGGATGATGAGCAGGGCCAGCTTTTCGTCGATAACATGACCTTCAATGGTGTCGACCTCTCCAGGCTCCGCAAGAAGAAAGGACACACTGCACAGTGTGTTTGTTTGGTCGATGCCTTGGGTAACCGTACAATGCGACCCTGTCTCTCAAATGCTGCCAAGGTTCAGGCAGAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGTGGTTGGTGTTGAGATATGCAATACTCAATCTGGAAGTTATTCAAGCAGCCATTGTTTTGGCCAAACAGGAAGGCCTTCTTGTTTCCTTGGATTTGGCAAGTTTTGAGATGGTCAGGAACTTTAAACTGCCACTTCTGAAGTTACTGGAATCTGGGAACATAGACCTCTGCTTTGCCAACGAGGATGAGGCAACTGAACTTTTAAGGGGCGGACAGGATGCTGATCCAATAGCTGCCGTAGAATTTCTTTCCAAATACTGCCAATGGGCGGTGGTAACATTGGGCTCTAATGGATGCNTTGCTAAACATGGGAAGGAGATGATACATGTCCCGGCCATAGGGGAAGCAAAGGCAACTGATGCTACAGGAGCAGGGGACCTTTTTGCAAGTGGGTTTTTGTATGGAGTGGTCAAGGGTTTGTCACTAGAAGAATGCTGCAAAGTAGGCGCATGCAGTGGTGGATCTGTCATCCNCTCTCTTGGCGGTGAGGTCACATTAGAGAATTGGCAATGGATGTACAAGCAGATGCAGATAAAGGGTCTTCCCACGCCTGATGCCATGGTACATGCAAAATGAATAGTGGCCAACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	142953	145910	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003507.1	PF00294.19	PfkB	91	352	4.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	88.387
SRR1783600	control	88.027
SRR1783602	moderate drought stress	87.181
SRR1811619	moderate drought stress	86.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	81.087
DRR006520	Root Summer glycyrrhizin high producing strain	79.179
DRR006521	Root Winter glycyrrhizin high producing strain	23.427
DRR006522	Root Winter glycyrrhizin high producing strain	22.819
DRR006523	Root Summer glycyrrhizin low producing strain	47.166
DRR006524	Root Summer glycyrrhizin low producing strain	45.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	91.698
SRR2868004	Drought Stress (root)	116.924
SRR2967015	Control (root)	103.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.944
SRR9715740	Leaf	79.951
SRR9715741	Leaf	65.535
SRR9715739	Root	60.448
SRR9715742	Root	60.028
SRR9715743	Root	55.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.808
SRR8749028	MeJA induced 9h	12.175
SRR8749029	MeJA induced 9h	17.674
SRR8749030	Uninduced	2.447
SRR8749031	Uninduced	1.752
SRR8749032	Uninduced	2.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	98.311
SRR8400027	Control - Root	101.534