Gene detail

Gene detail information of Glyur000028s00003504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39230.1	8.00E-133	NmrA-like negative transcriptional regulator family protein
NR	AHA84208.1	0	phenylcoumaran benzylic ether reductase [Phaseolus vulgaris]
COG	YP_007551190.1	2.00E-16	hypothetical protein AZKH_1901 [Azoarcus sp. KH32C]
Swissprot	tr\|E1U332\|ALL12_OLEEU	2.00E-173	Isoflavone reductase-like protein
trEMBL	tr\|V5NAQ9\|V5NAQ9_PHAVU	0	Phenylcoumaran benzylic ether reductase {ECO:0000313\|EMBL:AHA84208.1}

Sequence

Transcript Sequence

>Glyur000028s00003504.1
CTGAAGGGTGTTGTCGTAATTTAAAATAGAGGACACTTGCTTGCTGATAAATGAAGGGATTGGAGAGGGCAAGGCAGAGAAGTGTGAAACTCCAAAGCGGTTTTGGAAAGAAAGAATCGAGTGAGAGTGAGAGTGAGGAGTGAGCATTGTACTCGCGTCGATGGCGGAGAAAAGCAAGATTTTGATAATCGGAGGCACGGGTTACATCGGCAAACATATAGTGGAAGCAAGCGCAAAAGCTGGACACCCCACTTTTGCATTGNTAAGGGAATCCACCCTCTCTAACCCAGCCAAGGCTAATCTCCTCGACAAATTCAAGACTCTGGGCGTTAATTTGGTCCCTGGGGATCTGTACGATCATGAGAACTTGGTGAAAGTGATAAAGCAGGTGGACGTGGTGATATCCACGGTGGGTCACTTGCAGCTTGCCGATCAGGTCAAGATCATCGCTGCAATTAAGGAGGCTGGTAACGTTAAGAGGTTTTTCCCTTCGGAATTTGGGAACGATGTTGATCGCGTCCATGCGGTAGAGCCAGCAAAATCCGCATTTGCCATCAAAGTCCAAATTCGACGCACTGTTGAAGCCGAAGGCATACCCTATACATACGTCTCTAGCAACTGCTTCGCTGGCTATTTTCTGCCCACATTAGCACAGCCAGGAGCCACAGCTCCACCCCCACCTAGAGACAAAGTCATTATCTTGGGCGATGGAAATCCCAAAGCGGTCTTCAACAAGGAAGATGATATTGCAACCTACACCATTAGAGCTGTGGATGACCCAAGGACATTGAACAAGATTCTCTACCTCAGGCCCCCTCACAACATTTACTCATTCAATNAGCTTGTCGCCTTGTGGGAGAAAAAGATTGGCAAGACCCTCGAAAAAACTTATGTTCCAGAGGAGAAGCTTCTCAAGGACATTCAAGAGGCACCTCTTCCAATCAATGTGGTGTTGGCAATCAATCACTCGGTGTTCGTCAAGGGTGACCACACCAACTTTGAGATTGAGNCTTCCTTTGGGGTTGAGGCTTCCGAGTTATACCCAGATGTCAAATACACCACCGTGGATGAATTCCTTGATCAGTTCGGATCGCCTTCTGGTGTCATGTACGCTGTAGAACTTATTACGACTCGACTGATTGAGAATGATAAAGTGGTCGCGTCGATGGGTGAGAAAAGCAAGATCTTGATAATCGGAGGCACGGGCTATATCGGTAAACATATAGTGAAAGCAAGCGCAAAAGCTGGACATCCAACTTATGCATTGATCAGGGAATCCACCCTCTCTGACCCAGCCAAGGCTAATCTCCTCCACAATTTCAAGACTCTGGGTGTTAATTTGGTCCCTGGGGATCTCTGCGATTATGAGAACTTGGTGAAAGTTATCAAGCAGGTGGATGTCGTCATATCTGCGGTGAGTCACTCACAGGCTACCGATCAGGTCAACATCATCGCTGCCATTAAAGAGGCTGGTAATGTTAAGAGATTTTTNCCTTCGGAATTTGGGAACGACGTAGATCGTGTCNATGCTGTGGAGCCAGCAAAATCTGTATTCGCCGTAAAAGCCCAAATTCGGCGAACGATTGAAGCCGAAGGCATTCCCTACACATACGTCTCCACTAACTCCTTTGCTGGCTATTTTCTACCAACATTTGTGCAACCAGGAGCCACAGGCCCACCTCCCCCGAAAGACAAAGTCACTATCTTGGGCGATGGAAACACCAAAGCAATTTTCAACAAGGAAGAGGACATTGGAACCTACACTGTTAGAGCTGTGGATGACCCAAGGACATTGAACAAGGTTCTCTACCTCAGGCCCCCTAAGAATATTTACTCATTCAATGAGGTTGTCGCCTTGTGGGAGAAGAAGATTGGCAAGACCCTCCAAAAAGTTTATGTTCCAGAAGAGAAGCTTCTCAAGGACATTCAAGAGACACCTTTTCCAAACAATGTGGGATTAGCAATCTGCCACTCGGTGTTTGTGAAGGGTGACCACACCAACTTTGAGATTGAGCCTTCTTTTGGGGTTGAGGCTTCCGCTTTATACCCGGATGTCAACTACACCACCGTGGAACAATATCTTGATCAGTTCGTTTGAGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	117185	122901	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003504.1	PF05368.8	NmrA	7	300	1.90E-88
Glyur000028s00003504.1	PF05368.8	NmrA	342	635	2.80E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	229.454
SRR1783600	control	230.212
SRR1783602	moderate drought stress	155.544
SRR1811619	moderate drought stress	155.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	328.807
DRR006520	Root Summer glycyrrhizin high producing strain	323.823
DRR006521	Root Winter glycyrrhizin high producing strain	31.868
DRR006522	Root Winter glycyrrhizin high producing strain	33.177
DRR006523	Root Summer glycyrrhizin low producing strain	201.034
DRR006524	Root Summer glycyrrhizin low producing strain	204.907
DRR006525	Leaf Summer glycyrrhizin high producing strain	89.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	92.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	283.253
SRR2868004	Drought Stress (root)	239.798
SRR2967015	Control (root)	140.450

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.570
SRR9715740	Leaf	53.258
SRR9715741	Leaf	52.825
SRR9715739	Root	101.137
SRR9715742	Root	147.934
SRR9715743	Root	137.401

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.363
SRR8749028	MeJA induced 9h	92.141
SRR8749029	MeJA induced 9h	61.277
SRR8749030	Uninduced	32.619
SRR8749031	Uninduced	18.191
SRR8749032	Uninduced	25.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	195.636
SRR8400027	Control - Root	185.196