Gene detail information of Glyur000028s00003499 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47271.1 | 2.00E-40 | Cystathionine beta-synthase (CBS) family protein |
| NR | XP_004501007.1 | 4.65E-100 | PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like [Cicer arietinum] |
| COG | YP_007589007.1 | 3.00E-14 | putative signal-transduction protein containing cAMP-binding and CBS domains [Rhodanobacter denitrificans] |
| Swissprot | tr|Q9LEV3|CBSX3_ARATH | 3.00E-40 | CBS domain-containing protein CBSX3, mitochondrial (Precursor) |
| trEMBL | tr|A0A072V470|A0A072V470_MEDTR | 2.00E-99 | Cystathionine beta-synthase (CBS) family protein {ECO:0000313|EMBL:KEH36163.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 102989 | 104632 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003499.1 | PF00571.23 | CBS | 105 | 160 | 3.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.550 |
| SRR1783600 | control | 1.607 |
| SRR1783602 | moderate drought stress | 1.379 |
| SRR1811619 | moderate drought stress | 1.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.267 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.445 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.270 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.312 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.700 |
| SRR2868004 | Drought Stress (root) | 5.047 |
| SRR2967015 | Control (root) | 4.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.006 |
| SRR9715740 | Leaf | 0.436 |
| SRR9715741 | Leaf | 0.531 |
| SRR9715739 | Root | 0.049 |
| SRR9715742 | Root | 1.903 |
| SRR9715743 | Root | 1.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.876 |
| SRR8749028 | MeJA induced 9h | 16.518 |
| SRR8749029 | MeJA induced 9h | 21.417 |
| SRR8749030 | Uninduced | 35.389 |
| SRR8749031 | Uninduced | 95.590 |
| SRR8749032 | Uninduced | 44.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.686 |
| SRR8400027 | Control - Root | 2.137 |