Gene detail information of Glyur000028s00003498 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | CDP07502.1 | 1.29E-08 | unnamed protein product [Coffea canephora] |
| trEMBL | tr|A0A068UGU9|A0A068UGU9_COFCA | 5.00E-09 | Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313|EMBL:CDP07502.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 102911 | 104837 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.135 |
| SRR1783600 | control | 0.114 |
| SRR1783602 | moderate drought stress | 0.193 |
| SRR1811619 | moderate drought stress | 0.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.319 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.033 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.234 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.558 |
| SRR2868004 | Drought Stress (root) | 0.197 |
| SRR2967015 | Control (root) | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.172 |
| SRR9715740 | Leaf | 0.005 |
| SRR9715741 | Leaf | 0.044 |
| SRR9715739 | Root | 0.156 |
| SRR9715742 | Root | 0.097 |
| SRR9715743 | Root | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.905 |
| SRR8749028 | MeJA induced 9h | 14.609 |
| SRR8749029 | MeJA induced 9h | 10.086 |
| SRR8749030 | Uninduced | 16.600 |
| SRR8749031 | Uninduced | 66.599 |
| SRR8749032 | Uninduced | 15.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.436 |
| SRR8400027 | Control - Root | 0.100 |