Gene detail

Gene detail information of Glyur000028s00003485

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42760.1	6.00E-126	Leucine carboxyl methyltransferase
NR	KEH36154.1	0	leucine carboxyl methyltransferase [Medicago truncatula]
COG	YP_003900331.1	3.00E-24	methyltransferase [Cyanothece sp. PCC 7822]
trEMBL	tr\|A0A072V285\|A0A072V285_MEDTR	0	Leucine carboxyl methyltransferase {ECO:0000313\|EMBL:KEH36154.1}

Sequence

Transcript Sequence

>Glyur000028s00003485.1
TTCTCCACAAGCCTCTTAATCTTAATCCCCAATTTTGTGTAACNCATGTCTGATCAAATAAATGGCTTGCCTGAGGACCAAGCATGGCCAGAGCTAAAGCTTCCAGACTTGTTGCATAATGAGACTGTTCGACAAGTCCATGCAACCATTGAGAAAGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCGGGAAGGGCTATGTGGAAGCATGTGATCCATGATCCTCTGGCTGCTTTGCTTGCAGGGGAGACTTACCTGAGAAGCCTCCATGAAAAGATGAAGAAGGACCGTCTCAGCAATGCACGTGAAACTTCTGGGGTGATTCTTGCGGTTCGAACCCTTTGGTTTGATTCTAGACTGGAAGATGTTCTCAATTCCCCCAATGGCAGAGAATCACAGGTTGTTCTACTTGGTGCAGGAATGGACACAAGAGCATATCGTTTGAGTTGCTTGAAGGACAGCCATGTCTTTGAGGTTGACTTTCCAGAAGTCTTGGAGGTGAAAACTACTATTTTGCAAGCGGCCAAGGGATCCACATGTGACTCCCAGCAAATCATGTCGAAAGCCAAATCCTTAACCAGAGTGGCAGCTGACATAAGAGAAAGTGACTGGATGGAAAAGCTTCAAATCGCAGGTTTCTTGCCACAAAAGAGCACGGTTTGGATTCTAGAAGGCATCCTCTACTACCTCACCCAATCCCACGCCATGCAAGTGCTGAGGGTATTAGCTAACAATTGCATCCTAACCCACACGGTCCTCTTAGCAGACTTCATGAATAAGTCATCAACCACGCTATCCAATTCAGCATTCCAATTTTACAGTGATTGGCCAGACCATCTTTTGCCATCTATTGGCTTCACTAATGTAAAACTTTCACANATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAACGATCCGTTGAATCTCTTTAACAGGCTCCGCAGCTTGCCTAGGTCATTGCAAACCAATCCAGACGACGGAACGCCATGCTGTCGCTTGTACTTGGTGGAAGCTTCTGGTTCACCCGATCAAAGTGCCGANCATAAAGGGTCAATCACTCAGTCCTGATACGTACATCCTTGTCTCCAATTCACATCTACTCATAGTCTTGTCCAGATGTGTTGAGGATAGCACATGGATGTATGTTGGATGGCCCATGTAATGTCNCTCGTGCAATTGCTACACTATTGGCAAAAATGCTAGAGGGGCCAAATAGCTATAAATAGCATGACCTAAAATTAAATAGCTTATGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	57495	60690	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032259 methylation

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003485.1	PF04072.9	LCM	46	230	2.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.115
SRR1783600	control	0.116
SRR1783602	moderate drought stress	0.141
SRR1811619	moderate drought stress	0.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.175
DRR006522	Root Winter glycyrrhizin high producing strain	0.171
DRR006523	Root Summer glycyrrhizin low producing strain	0.097
DRR006524	Root Summer glycyrrhizin low producing strain	0.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	61.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.833

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.408
SRR2868004	Drought Stress (root)	2.156
SRR2967015	Control (root)	1.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.670
SRR9715740	Leaf	61.415
SRR9715741	Leaf	31.002
SRR9715739	Root	0.078
SRR9715742	Root	0.242
SRR9715743	Root	0.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.188
SRR8749028	MeJA induced 9h	0.124
SRR8749029	MeJA induced 9h	0.190
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.107
SRR8749032	Uninduced	0.615

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.321
SRR8400027	Control - Root	0.404