Gene detail

Gene detail information of Glyur000027s00001606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38080.1	0	Laccase/Diphenol oxidase family protein
NR	KHN06247.1	0	Laccase-4 [Glycine soja]
COG	YP_004054196.1	1.00E-28	multicopper oxidase type 3 [Marivirga tractuosa DSM 4126]
Swissprot	tr\|O80434\|LAC4_ARATH	0	Laccase-4 (Precursor)
trEMBL	tr\|I1N014\|I1N014_SOYBN	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur000027s00001606.1
TTCAAGAGTGTGACAAGCCAGCAAAGAAGAAGAAGCTCTAGCTAGCAGCAGAGAACTCTAAAGGGTAGTCATGGCAGCGCTGGGGATTCGAATCATACTATTGCTGGCAGCATGCCTGCTTCCATTATCTGTGGAAGCCATGGTTCGCCACTACAAGTTCAATGTGGTGATGAAGAATGCCACAAGAATGTGTTCAACTAAGCCCATTGTCACCGTAAATGGAAAGTTCCCAGGTCCCACAATCTATGCTAGGGAAGATGACAATGTTCTGATTAAGGTGGTCAACCAAGTCAAATACAATGTTAGCATACACTGGCATGGAGTCAGACAAGTACGAACGGGTTGGGCTGACGGGCCAGCATACATAACCCAGTGCCCAATTCAACCGGGCCAGGTCTATACCTACAACTTCACCCTTACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCCTCTGGCTTAGGGCCACTGTCCATGGTGCCTTGGTCATCTTGCCAAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCACATGGAACAAGTTATTGTATTGGGTGAATGGTGGAAATCAGATACTGAGGCTATAATAAATGAAGCTTTGAAATCTGGGTTGGCTCCAAATGTCTCTGATGCCCACACAATCAATGGTCATCCAGGGCCTGTCCAAGGTTGTTCTTCACAAGGAGGATTCTCATTCCAAGTTCAGCCTGGAAATACCTACTTGCTAAGAATCATTAACGCTGCACTCAATGAGGAGCTCTTCTTTAAGATTGCTAACCATGAATTCACCGTTGTTGAGGTTGATGCCNCCTACACAAAACCTTTCAAAACCNACACCGTTGTTATAGCACCTGGCCAGACTACAAATGTGCTTCTAACAGCTAAACATGCAATTGGCAAGTACTTGGTTGCAGTCTCTCCTTTCATGGATGCTCCTATTGCAGTTGACAACAAGACTGCCACCGCCACATTACACTATTCAGGCACCCTTGGTTCCACCATCACCACCCTCACTTCCGTGCCTCCCAAGAATGCTACTCCACTTGCTACCAGTTTCACAGACTCTCTCAGAAGCTTAAACTCCAAAAAGTACCCTGCTAGAGTTCCATTGAAGATTGACCATAACTTGCTCTTCACTATTAGCCTTGGTATCAATCCTTGTGCTACTTGTGTGAATAATAGTCGGGTGGTGGCAGATATCAACAATGTTACCTTTGTGATGCCTAAAATTTCTCTTCTCCAAGCACATTTCTTCAATATTAAAGGGGTTTTTACTGATGATTTTCCTGGAAATCCTCCTGTAGTCTACAACTTCACAGGGACACAACCAACCAATTTCAAGACCATGAAAGGGACAAGGCTTTATAGACTTGCCTACAACTCTACAGTTCAATTAGTGTTGCAAGACACTGGAATGATAACACCTGAGAACCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAGTTGGTAGAGGGCAAGGGAACTTTAACCCCAAAAAGGACACCAAANAGTTTAACCTTGTAGACCCTGTGGAGAGAAATACAGTTGGTGTCCCAGCTGGGGGGTGGACTGCTATCAGGTTCAGGGCTGACAATCCAGGGGTTTGGTTTATGCACTGCCACTTGGAAATTCATACAACATGGGGACTGAAGATGGCATTTGTTGTGGACAATGGTAAAGGACCAAATCAATCTCTATTACCACCTCCAAGTGACCTCCCCAAGTGTTAAGAAGAGTACTAATTAACATTCAATACCAATTGAGGAAGGGAAAACACATGAAGAGAACTACATATGCCAAAGGAAGGAACAAACAAGGCTAATAACAAGATTTTCTTGGAGTAAGGAAAGAAGAAGATGCCCAATATTTGACATGTATTCATTTATTCTCCCCTTTCATCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	561405	564900	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001606.1	PF07732.10	Cu-oxidase_3	32	145	4.90E-43
Glyur000027s00001606.1	PF00394.17	Cu-oxidase	159	307	6.20E-42
Glyur000027s00001606.1	PF07731.9	Cu-oxidase_2	408	539	7.30E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.178
SRR1783600	control	1.147
SRR1783602	moderate drought stress	0.616
SRR1811619	moderate drought stress	0.593

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.646
DRR006520	Root Summer glycyrrhizin high producing strain	10.543
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	14.864
DRR006524	Root Summer glycyrrhizin low producing strain	14.760
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.733
SRR2868004	Drought Stress (root)	8.175
SRR2967015	Control (root)	8.161

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.753
SRR9715740	Leaf	0.992
SRR9715741	Leaf	0.334
SRR9715739	Root	0.104
SRR9715742	Root	4.198
SRR9715743	Root	3.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.952
SRR8400027	Control - Root	3.368