Gene detail

Gene detail information of Glyur000027s00001605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54140.1	3.00E-123	peptide transporter 1
NR	XP_006591201.1	0	PREDICTED: peptide transporter PTR1-like isoform X1 [Glycine max]
COG	NP_870446.1	7.00E-34	oligopeptide transporter, kidney isoform [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9M390\|PTR1_ARATH	2.00E-150	Protein NRT1/ PTR FAMILY 8.1
trEMBL	tr\|I1LLE9\|I1LLE9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G23370.1}

Sequence

Transcript Sequence

>Glyur000027s00001605.1
CATTTATTGTCTATTGTCCATCAAGTGTATAGAAATCATTATTCATTTTATAATTTAGCTGGATGGTGTTTCCATGAGTTGCCAACTTTAAAGGCCAGAGATGCACTTCTTTGATTCCATATACTGTGCTTGTGTGTTTTGATTTGGGGTTTATTTATCTGCTGAGATTCGGACAGTGTTTGCAAACAAATTTGAAGTCTATCTCTCTATCATTCTTTTTTTTTCTTCTTCTACTGATCTCTGGATTCATGTATTTGAATCTTCCACCTTTCTGGAGATAAACTNCCTTTTATTCAAAGGAAGAGAGAATTCACTACAACTAAACATCAGAATCAGAAATTGATTCTTAGGAGTTTTACTTTTGTCTTTCTGCCAAAGACATCAGTTTCAGCAAGATACAACTTACAACTGAATAAGTGGCCATTATCTACAAGTTTTGAATAACAATGGCAGAGGATGATGTTTACACAAAAGATGGAACAGTTGATTATCTTGGAAATCCAGCTAATAAAAAGGAAACTGGAACCTGGAGAGCCTGCCCCTTTATCCTAGGAAATGAATGTTGTGAGAGATTGGCTTATTATGGGATGAGCACAAACCTGGTGCTTTATTTTAAGAAGCGGCTGAATCAGCACAGTGCTACTGCTTCCAAGAATGTCTCTGATTGGAGTGGAACATGCTACATCACACCATTAATTGGAGCATTTATGGCTGATTCTTATCTTGGAAGATACTGGACAATTGCTCTCTTTTCAATAATCTATGTTATTGTTAGTATGGGAATGACACTCTTGACATTGTCTGCATCAGTTCCTGGCATAAAACCAACATGTCATGGAGAAGAAAATTGCCATGCTACTGATGGACAGAGTGCAGTGTGCTTCATAGCCCTTTACCTTGTAGCTCTTGGCACTGGTGGGATCAAGCCTTGTGTTTCATCCTATGGAGCAGATCAGTTTGATGATGCTGACCCTGATGAGAAGGAACACAAGAGTTCTTTCTTCAACTGGTTCTATTTCTCAATCAACATTGGTGCTCTCATTGCTTCTTCTCTATTGGTATGGATTCAAGATAATGTTGGTTGGGGATGGGGCTTTGGCATCCCAGCAGTGGCCATGGCAATTGCGGTGGTGAGTTTCTTTTCAGGCACAAGGCTGTATCGGAATCAGAAGCCCGGGGGCAGCGCCCTCACTCGTATCTCTCAGGTGATAGTGGCATCCATAAGGAAGTACCATGTTGAAGTACCTGCTGACAATTCCCTTTTANATGAGACTGCTGAGACAGAATCTGCTATCAAGGGAAGCCGCAAGCTTGACCACACAAATGAGTTAAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	555225	556997	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006857 oligopeptide transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001605.1	PF00854.16	PTR2	96	293	7.00E-64
Glyur000027s00001605.2	PF00854.16	PTR2	96	293	7.00E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.836
SRR1783600	control	4.726
SRR1783602	moderate drought stress	11.704
SRR1811619	moderate drought stress	11.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.860
DRR006520	Root Summer glycyrrhizin high producing strain	7.602
DRR006521	Root Winter glycyrrhizin high producing strain	7.987
DRR006522	Root Winter glycyrrhizin high producing strain	8.368
DRR006523	Root Summer glycyrrhizin low producing strain	12.423
DRR006524	Root Summer glycyrrhizin low producing strain	12.358
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.605
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.259
SRR2868004	Drought Stress (root)	48.209
SRR2967015	Control (root)	59.856

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.834
SRR9715740	Leaf	52.958
SRR9715741	Leaf	93.507
SRR9715739	Root	5.806
SRR9715742	Root	15.244
SRR9715743	Root	13.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.594
SRR8749028	MeJA induced 9h	66.717
SRR8749029	MeJA induced 9h	7.397
SRR8749030	Uninduced	68.047
SRR8749031	Uninduced	14.405
SRR8749032	Uninduced	9.800

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.175
SRR8400027	Control - Root	11.013