Gene detail

Gene detail information of Glyur000027s00001603.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49475.1	4.00E-15	AP2/B3-like transcriptional factor family protein
NR	XP_003600452.1	5.85E-100	B3 domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	7.00E-25	B3 domain-containing transcription factor VRN1
trEMBL	tr\|G8A2Z5\|G8A2Z5_MEDTR	2.00E-100	Transcriptional factor B3 family protein {ECO:0000313\|EMBL:AES70703.1}

Sequence

Transcript Sequence

>Glyur000027s00001603.1
ATGTTTACAAGAAGATATAGTGTTGCTGGTCTATCAAATCCAGTGATTCTCAAGACTCCTGATGGCACTGAATGGAGAGTGCGTTGGACAAAACTAAATGGCGAGGTTTGGTTGGAGAAGGGTTGGAAAGAATTTGTTGAAAACTACTCTCTCGAACATGGGTATGTGGTGTTGTTTAAATATGAAGGAACTTCAGTGTTTGATGTAGTCATACTTGACAAGAGTGCTGTAGAAATTGACTACCCTTTTATCAAAAAAGAAATAGATTATCCTTTGTGTGGTGAAAATGGTGACAATCTTGATCAGAGTGATGATGAATCAGTTCAGATTTTGGATGAATGGCCAAATCAGATGGCCAGACAAAGGTCACCATCATTTTCTCCTCGATCCCNTATGATAATTAAAGGTGAGAAGAATACTCAAAGAAGAACTTCATCATTGAATTGGCCAAGGGAAGCAAGAGCTCGGGAAGTAGCTGAAAAATTCACCTCAAACAATCCCTTTTTCACGGTTTTCNTAAAACCTGCGCATGTGGCAAAAAGACAGCTGGTAGTGTGTGCACCAGACTTAAAAGGTGTTATTGAGAACAAGCAGAAGTATGTGATGCTGCAGATTGGGAAAAGATCATGGAGAGTGAAATTGCTCCCTTATCACAGCGGCGATAGGCATCACCNCCGCCTCTCTGCCGGTTGGCCCTTGTTTGTAAGTGAAAGTGAAGTGCAACCAGGAGATGTTTGTGTCTTTGAACTCATTAACAGACAAGATCCTGTTTTTGAAGTCCATGTTTTCAAAAGTCTCAGTTAACTTGTGTGCTTAGAGCCGTTGTTTTAAGAGAACTAAATTTGAATAAGTAACACTTTCCACTCTCTCAAATGGGTGAAGTACTTCTTCACCTTTGGTTGTACTTGTATTATTTTGGAAATGTTTGATGGTACAGTACACTCTATGGTCCATGATTAGTTTGAAGCAACGATTTAATTGTTTCTCCTATCAAATTTATCAAATCTTACGCACCATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	551365	552758	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001603.1	PF02362.16	B3	11	74	2.10E-11
Glyur000027s00001603.1	PF02362.16	B3	168	264	2.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.474
SRR1783600	control	0.445
SRR1783602	moderate drought stress	2.633
SRR1811619	moderate drought stress	2.676

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.360
DRR006520	Root Summer glycyrrhizin high producing strain	2.255
DRR006521	Root Winter glycyrrhizin high producing strain	4.717
DRR006522	Root Winter glycyrrhizin high producing strain	4.749
DRR006523	Root Summer glycyrrhizin low producing strain	2.263
DRR006524	Root Summer glycyrrhizin low producing strain	2.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.209

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.340
SRR2868004	Drought Stress (root)	4.511
SRR2967015	Control (root)	7.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.502
SRR9715740	Leaf	10.973
SRR9715741	Leaf	26.656
SRR9715739	Root	0.119
SRR9715742	Root	0.601
SRR9715743	Root	0.614

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.694
SRR8749028	MeJA induced 9h	2.090
SRR8749029	MeJA induced 9h	1.163
SRR8749030	Uninduced	10.723
SRR8749031	Uninduced	1.943
SRR8749032	Uninduced	2.911

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.674
SRR8400027	Control - Root	1.293