Gene detail information of Glyur000027s00001598


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59970.13.00E-41Histone superfamily protein
NRACG30677.18.72E-66histone H4 [Zea mays]
Swissprottr|P0CG89|H4_SOYBN7.00E-67Histone H4
trEMBLtr|Q5NSW2|Q5NSW2_FRAAN5.00E-65Histone H4 {ECO:0000256|RuleBase:RU000528} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00027528610528921-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006334  nucleosome assembly


cellular_component

GO:0000786  nucleosome

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001598.1PF00125.19Histone28942.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.034
SRR1783600control17.414
SRR1783602moderate drought stress11.456
SRR1811619moderate drought stress12.377

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.346
DRR006520Root Summer glycyrrhizin high producing strain26.291
DRR006521Root Winter glycyrrhizin high producing strain2.464
DRR006522Root Winter glycyrrhizin high producing strain2.048
DRR006523Root Summer glycyrrhizin low producing strain19.593
DRR006524Root Summer glycyrrhizin low producing strain18.883
DRR006525Leaf Summer glycyrrhizin high producing strain8.923
DRR006526Leaf Summer glycyrrhizin high producing strain8.868

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)189.101
SRR2868004Drought Stress (root)101.120
SRR2967015Control (root)89.749

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf26.436
SRR9715740Leaf3.522
SRR9715741Leaf15.369
SRR9715739Root20.219
SRR9715742Root17.102
SRR9715743Root20.472

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h186.826
SRR8749028MeJA induced 9h120.972
SRR8749029MeJA induced 9h115.830
SRR8749030Uninduced14.196
SRR8749031Uninduced6.946
SRR8749032Uninduced3.157

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root137.624
SRR8400027Control - Root125.991

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved