Gene detail

Gene detail information of Glyur000027s00001597

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58940.1	2.00E-113	calmodulin-binding receptor-like cytoplasmic kinase 1
NR	XP_004500221.1	0	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 1-like [Cicer arietinum]
COG	NP_623114.1	1.00E-27	Serine/threonine protein kinase [Thermoanaerobacter tengcongensis MB4]
Swissprot	tr\|Q9FIL7\|CRCK1_ARATH	3.00E-141	Calmodulin-binding receptor-like cytoplasmic kinase 1
trEMBL	tr\|I1LLF5\|I1LLF5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G24410.1}

Sequence

Transcript Sequence

>Glyur000027s00001597.1
TTGCAGGCTAATAATTTTCATTGGACAAGAACAAAAAATGTTTAAAAAACAGGTTAAGGTATGAATGAAACTACACATGGCAAGAAAATGAAAGCAACTTAGATGATCTCCCTTTTGAATATTGGCAATAAAGAAGAGATGATATTGAATAGTCTTTAGCTTATGCAAATGAAGAAACCACGAACCCCCAGCTTGCATCAGTCTAGCCAAAGAAAAAAGAATGCTGGTCTCAAAGATAGTGGTAAAGGCAATGGCAATGGCACAAAGAGGCAAAATCCTAACAAGAATCATAGTGCTCCCATGACATATTTCAAGTCTGCTGTCAAGAAATGTGCAAGCGTTTTTGCATTGTTTCTCCCTGGGAAAAGAAAAACAGCCTCAGAAGCTGTTGAAAATGATGACACAAAGAATACACACAAAGTCAGAGGGGTATCATCTTCAACAGATGTATCATCTGATAGTTCTAAGAGTTCGTCAAAATGGAAGTTTTCTCAATCCTCAGCATCATCTACCACATCAAGTAGTCAACTTGGGATGGGAAACTTTTCCTTTGAGGAAATTTATAAGGCAACAGCAAAATTCTCTCCAGATAATAAGATTGGGGAAGGTGGGTTTGGAACAGTATATAAGGGCAAGCTTAGTAATGGACCCCTTGTGGCTGTAAAGCGTGCCAGGAAGGATGTACAAAGCAATCACTTGGCTGAGTTCAGAAATGAAATAAACACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAAGTGGCATGGATATTTGGAGCATGGAGANGAAAAGATTATTGTTACTGAATATGTTAACAATGGAACCCTTCGGGAACATCTAGATGGTGTGCGGGGAAATGGACTAGAAATCGGTGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATTACATACCTTCATATGTACACAGATCATCCAATTATTCACAGAGACATCAAAGCATCAAATATATTAATCACTGACAATCTAAGGGCCAAAGTGGCAGACTTTGGTTTCGCCCGGTTGGCCGCNGAAGACCCCGCCGCAACCCACATTTCAACTCAAATTAAAGGAACAGCTGGCTACCTGGATCCTGATTACATGAGAACACACCACCTCTCTGAAAAGAGNGATGTTTATTCCTTTGGCGTGTTACTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCCCTCAGTGAGAGAGTTACAATTAAATGGGCNATGCAGATGTTGAAACAAGGAGAAATTGTGATTGCAATGGATCAAAGGCTTAGGAGAAGTCCAGCCTCAAACAGGGCAGTGCACAAGGTTCTGAAGCTTGCTTTCCAATGCCTTGCACCTGTGAGACGATCACGGCCATCCATGAGGAACTGTGCAGAGGTTCTATGGGGCATCCGCAAAGAGTTCAGAGACAAAGCCTTTTCTCATCCTCCCATTAATGCTTCTCACCACCATTCTGCAGATTTTCCTCAGAGAGATTCTAGGAAGAATAGGCACACGTCGAATCAATTTGTCTCGGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	521539	525067	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001597.1	PF07714.12	Pkinase_Tyr	143	413	7.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.709
SRR1783600	control	3.570
SRR1783602	moderate drought stress	2.131
SRR1811619	moderate drought stress	2.004

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.338
DRR006520	Root Summer glycyrrhizin high producing strain	1.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.217
DRR006522	Root Winter glycyrrhizin high producing strain	0.141
DRR006523	Root Summer glycyrrhizin low producing strain	7.061
DRR006524	Root Summer glycyrrhizin low producing strain	7.348
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.681

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.923
SRR2868004	Drought Stress (root)	22.446
SRR2967015	Control (root)	10.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.586
SRR9715740	Leaf	41.422
SRR9715741	Leaf	115.715
SRR9715739	Root	1.385
SRR9715742	Root	4.904
SRR9715743	Root	4.376

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.986
SRR8749028	MeJA induced 9h	42.235
SRR8749029	MeJA induced 9h	21.800
SRR8749030	Uninduced	123.433
SRR8749031	Uninduced	60.148
SRR8749032	Uninduced	24.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.395
SRR8400027	Control - Root	9.623