Gene detail

Gene detail information of Glyur000027s00001578

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29570.1	2.00E-142	proliferating cell nuclear antigen 2
NR	XP_004500211.1	0	PREDICTED: proliferating cell nuclear antigen-like [Cicer arietinum]
COG	YP_004484599.1	3.00E-25	DNA polymerase sliding clamp [Methanotorris igneus Kol 5]
Swissprot	tr\|O82134\|PCNA_PEA	0	Proliferating cell nuclear antigen
trEMBL	tr\|C6TGY7\|C6TGY7_SOYBN	0	Proliferating cell nuclear antigen {ECO:0000256\|RuleBase:RU000641}

Sequence

Transcript Sequence

>Glyur000027s00001578.1
CGTTTTAATTTTCCCACCAGTTTTCCCGAGAAAACTGAAAACCCGCAAAAACCCTAACCCGGAGTAAACCGACCCTCAGATACCTCGATCAAGATGTTGGAACTCCGTCTAGTCCAAGGTTCGCTCCTGAAGAAGGTGTTGGAGGCGATCAAGGAGCTGGTGAACGATGCGAACTTCGATTGCTCCTCGACCGGGTTCTCCCTCCAGGCCATGGACTCCAGCCACGTGGCACTGGTGGCGCTGCTGCTCCGCTCGGAAGGGTTCGAGCACTATCGCTGCGACCGCAACATTTCCATGGGCATGAATCTCAACAACATGTCCAAGATGCTCCGATGCGCCGGCAACGACGACATCATCACCATCAAGGGCGATGACGGCAGTGACACCGTCACCTTCATGTTCGAAAGCCCTACGCAAGACAAAATTTCTGATTTTGAGATGAAGCTGATGGACATTGATAGTGAACACCTTGGAATTCCAGAGGCAGAATATCATGCCATTGTTAGGATGCCATCGGCTGAGTTTGCTAGGATCTGCAAAGATCTCAGCAGCATTGGTGACACTGTTGTCATTTCGGTAACTAAGGAGGGTGTAAAGTTTTCCACCAAAGGAGATATTGGAGCTGCAAATATTGTCTGCAGACAGAATACTACCGTGGACAAGCCTGAAGAAGCTACTGTTATAGAGATGAATGAGCCTGTGTCCTTGACATTTGCATTACGATACATGAACTCTTTTACAAAGGCAACACCATTGTCTAATACAGTTACCATTAGTCTGTCAAATGAGCTGCCAGTTGTGGTTGAGTACAAGATTGCGGAGATGGGTTATGTCCGGTACTATTTGGCTCCCAAAATAGAGGAGGATGAAGAAGAAACAAAGCCTCAAGTTTAGTCTGTTACAGACGTTGGATGGGTATATTAGGATTTGAATTTGGTNGTAGTTTATTTTTTTTGGTGAAGTTTTTTATTGTGAAGGAATTTGCTTGTAGTTGTAGCCTGGTAGGTTGCCTTTATACATTATTTAAGATGTTTCACCATATGGCAATCTATGAATTCGGTAGAGGTGTATGGTCCATGCCACATTATTTTCCACCTTAATGTTGTTTAGAACAATGTTAAACAATGGATGAGTATTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	453064	455005	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006275 regulation of DNA replication

molecular_function

GO:0003677 DNA binding

GO:0030337 DNA polymerase processivity factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001578.1	PF00705.13	PCNA_N	1	125	3.10E-61
Glyur000027s00001578.1	PF02747.10	PCNA_C	127	254	2.20E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.309
SRR1783600	control	27.205
SRR1783602	moderate drought stress	13.786
SRR1811619	moderate drought stress	13.821

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.888
DRR006520	Root Summer glycyrrhizin high producing strain	33.574
DRR006521	Root Winter glycyrrhizin high producing strain	10.726
DRR006522	Root Winter glycyrrhizin high producing strain	10.875
DRR006523	Root Summer glycyrrhizin low producing strain	23.967
DRR006524	Root Summer glycyrrhizin low producing strain	24.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.940

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.650
SRR2868004	Drought Stress (root)	32.782
SRR2967015	Control (root)	32.105

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.133
SRR9715740	Leaf	4.204
SRR9715741	Leaf	7.621
SRR9715739	Root	13.949
SRR9715742	Root	14.670
SRR9715743	Root	13.886

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	85.927
SRR8749028	MeJA induced 9h	53.086
SRR8749029	MeJA induced 9h	43.018
SRR8749030	Uninduced	7.261
SRR8749031	Uninduced	4.174
SRR8749032	Uninduced	8.571

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.130
SRR8400027	Control - Root	49.928