Gene detail

Gene detail information of Glyur000027s00001576

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67630.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003600480.1	0	RuvB DNA helicase-like protein [Medicago truncatula]
COG	YP_003435611.1	6.00E-134	TIP49 domain protein [Ferroglobus placidus DSM 10642]
Swissprot	tr\|Q9FMR9\|RIN1_ARATH	5.00E-125	RuvB-like protein 1
trEMBL	tr\|G7J268\|G7J268_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:AES70731.1}

Sequence

Transcript Sequence

>Glyur000027s00001576.1
ATGACGGAGCTGAAGCTGTCGGAGAGCCGCGACCTGACGCGCATAGAGCGCGTGGGCGCTCACTCTCACATCCGCGGCCTCGGCCTCGACTCCTCCCTGGAGCCGCGCGCCGTCTCCGAGGGCATGGTCGGCCAGGTCTCCGCCCGCAAGGCCGCCGGCGTTATCCTCCAGATGATAAAGGACGGCAAAATCGCCGGCCGNGCCGTCCTCCTCGCCGGACAGCCCGGCACCGGCAAAACCGCCATCGCCATGGGAATGGCTAAGTCCCTCGGACTCGAAACACCGTTCGCCATGATCGCCGGCAGCGAGCTCTTCTCCCTCGAGATGTCGAAAACCGAAGCACTCACACAGGCCTTCCGCAAGGCCATCGGNGTCCGCATCAAGGAGGAGACTGAGGTCATCGAGGGCGAGGTCGTCGAGGTCCAGATCGACCGTCCCGCGGTGGCCGGNGCCGCCGCGAAGACCGGGAAGCTTACGCTGAAGACGACGGAGATGGAGACTGTGTACGACCTCGGGGCGAAGATGATCGAGGCGCTTGGGAAGGAGAAGGTGACGAGCGGTGACGTCATCGCCATCGACAAGGCCTCCGGGAAGATCACGAAGCTCGGAAGGTCGTTCTCCCGGTCGAGGGATTTCGACGCCATGGGGCCGCAGGTGAAGTTCGTGCAGTGCCCCGACGGAGAGTTGCAGAAGAGGAAGGAGGTCGTGCATTGCGTCACTCTCCATGAGATTGATGTTATTAATAGCAGAACGCAGGGATTTCTGGCTCTTTTCACNGGTGATACAGGTGAAATTCGTGCAGAAGTCAGAGAACAAATTGACACCAAAGTGGCAGAGTGGAAAGAAGAAGGAAAGGCAGAGATTGTACCTGGTGTCCTTTTCATTGATGAGGTACACATGCTTGACATTGAGTGCTTTTCGTTCCTCAATCGGGCTCTAGAGAATGAGATGGCTCCAATATTAGTTGTCGCTACCAACAGAGGCATAACAACTATTCGAGGCACAAATTACAAATCCCCACATGGGATTCCCATCGATCTACTTGATCGCCTACTCATCATCTCCACTCAACCTTACACTGAGGATGAAATTCGCAAGATTCTGGATATCAGATGCCAGGAGGAAGANGTGGAAATGACTGAAGGAGCAAAGTGTTTGTTAACCAAAATAGGNGTAGAGACATCTCTAAGATATGCTATTCATCTAATCACAGCAGCTGCATTGGCATGCCAAAAGAGAAAAGGAAAGGCAGTGGAATTGGATGATATAAATCGGGTTTACAATCTGTTTTTGGATGTCAAAAGATCAACACAGTACCTGATGGAATATCAAAGTCAGTACATGTTCAGTGAAACAGGAGAAGTTGAGGAAGATGATGCCAATGCTATGGTCTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	446545	448830	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003678 DNA helicase activity

GO:0005524 ATP binding

GO:0043141 ATP-dependent 5'-3' DNA helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001576.1	PF06068.8	TIP49	17	408	7.50E-185

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.572
SRR1783600	control	59.732
SRR1783602	moderate drought stress	81.105
SRR1811619	moderate drought stress	81.712

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.420
DRR006520	Root Summer glycyrrhizin high producing strain	87.991
DRR006521	Root Winter glycyrrhizin high producing strain	49.770
DRR006522	Root Winter glycyrrhizin high producing strain	49.677
DRR006523	Root Summer glycyrrhizin low producing strain	87.117
DRR006524	Root Summer glycyrrhizin low producing strain	88.594
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.044
SRR2868004	Drought Stress (root)	50.865
SRR2967015	Control (root)	54.517

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.630
SRR9715740	Leaf	20.369
SRR9715741	Leaf	16.795
SRR9715739	Root	42.165
SRR9715742	Root	47.913
SRR9715743	Root	43.502

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.508
SRR8749028	MeJA induced 9h	63.804
SRR8749029	MeJA induced 9h	41.993
SRR8749030	Uninduced	6.594
SRR8749031	Uninduced	2.834
SRR8749032	Uninduced	7.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.503
SRR8400027	Control - Root	51.752