Gene detail information of Glyur000027s00001572 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19855.1 | 6.00E-65 | Chaperonin-like RbcX protein |
| NR | XP_004500203.1 | 3.92E-141 | PREDICTED: uncharacterized protein LOC101506320 [Cicer arietinum] |
| trEMBL | tr|C6T2W6|C6T2W6_SOYBN | 4.00E-141 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU16004.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 424029 | 427962 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001572.1 | PF02341.10 | RcbX | 110 | 206 | 1.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.065 |
| SRR1783600 | control | 0.065 |
| SRR1783602 | moderate drought stress | 0.169 |
| SRR1811619 | moderate drought stress | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.091 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.098 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 94.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 94.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.523 |
| SRR2868004 | Drought Stress (root) | 19.013 |
| SRR2967015 | Control (root) | 10.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 177.617 |
| SRR9715740 | Leaf | 174.779 |
| SRR9715741 | Leaf | 202.421 |
| SRR9715739 | Root | 0.837 |
| SRR9715742 | Root | 1.593 |
| SRR9715743 | Root | 1.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.828 |
| SRR8749028 | MeJA induced 9h | 6.012 |
| SRR8749029 | MeJA induced 9h | 2.137 |
| SRR8749030 | Uninduced | 12.830 |
| SRR8749031 | Uninduced | 8.563 |
| SRR8749032 | Uninduced | 3.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.381 |
| SRR8400027 | Control - Root | 6.594 |