Gene detail information of Glyur000027s00001568 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43050.1 | 8.00E-53 | Protein of unknown function (DUF565) |
| NR | XP_003551354.1 | 6.97E-87 | PREDICTED: uncharacterized protein ycf20-like isoform X1 [Glycine max] |
| Swissprot | tr|Q1XDS2|YCF20_PYRYE | 3.00E-12 | Uncharacterized protein ycf20 |
| trEMBL | tr|K7MQE4|K7MQE4_SOYBN | 3.00E-87 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G07880.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 395932 | 398307 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001568.1 | PF04483.7 | DUF565 | 117 | 171 | 2.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.800 |
| SRR1783600 | control | 4.263 |
| SRR1783602 | moderate drought stress | 3.985 |
| SRR1811619 | moderate drought stress | 3.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.373 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.725 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.912 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.458 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.044 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.312 |
| SRR2868004 | Drought Stress (root) | 3.737 |
| SRR2967015 | Control (root) | 3.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.195 |
| SRR9715740 | Leaf | 6.730 |
| SRR9715741 | Leaf | 4.469 |
| SRR9715739 | Root | 2.897 |
| SRR9715742 | Root | 1.829 |
| SRR9715743 | Root | 1.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.829 |
| SRR8749028 | MeJA induced 9h | 2.472 |
| SRR8749029 | MeJA induced 9h | 0.956 |
| SRR8749030 | Uninduced | 0.352 |
| SRR8749031 | Uninduced | 0.099 |
| SRR8749032 | Uninduced | 0.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.166 |
| SRR8400027 | Control - Root | 7.820 |