Gene detail

Gene detail information of Glyur000027s00001567.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12840.4	3.00E-71	nuclear factor Y, subunit A1
NR	XP_004500195.1	0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LXV5\|NFYA1_ARATH	9.00E-90	Nuclear transcription factor Y subunit A-1
trEMBL	tr\|K7MQE5\|K7MQE5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G07890.2}

Sequence

Transcript Sequence

>Glyur000027s00001567.1
ATGTTCTGTGTCAAGTGTTACAACTCCAATGGATCTGAAGATATGCAGTCCAAATCTGAAACTGCAAATCGACTGAGGTCGGATCCTCATTCATTTCAACCTGGCGGTGTTTATTCTGAACCTTGGTGGCGTGGTATTGGATACAATCCCATGGCCCAAACAATGTCTGGGGCAAATGCATCCAATTCATCCTCTCTTGAATGCCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAATCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATCAAACAGGAAATTATGGGCAAGAACAACAAGGGATGCAGCACACTGCTACATCTGCACCTTCCATGCGTGAAGAGTGCCTTACTCAGGCTCCACAGCTTGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATGGGAATGCCCCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCCAAAGCGGAGCTTGAAAAGAAGCTAATAAAATCTAGGAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGGGGCACCGGAGGACGATTTGCAAAGAAGAGTGAAGTTGAGGCCTCAAACAACTCGGGCAAGGATAAAGACAATGGTTCTGGTCCAGTCCTGTCATCACAGTCAATCAGTTCATCTGGTTCCGAACCTTTGCCTTCAGACTCTGCCGAAACCTGGAATTCTCCCAACATGCAACAAGATGCGAGAGGATCGAAAGCGGTTGACGGGTATGGAGCAGCACCGAACTATGAAAATGGCAGTGGCTCCTACCATAATAACAATGGTTTGCAATCTTCAAGGTATCATCATCAGCACTCGGGCGAAAGAGTGGATGAAGGGGACTGTTCAGGCCAGCAAAGGGGAAGCATCTCCTCAAAGGAGGCATCACAGAGGCGTCTGGCGATTCAGTAGGGCCCCCCTCCNGCATGGGGGGGATAGATATGCCGAGGTTGGTTTGTATCCTAGTGACATATTTGGTGAATACCTTGGTTATCTGTGAAGCTTTCTTGGCAATATAATATGCCAAGCGGCAAATCATTCTTGGCTTTTGTCCTTGTGTTTATGGTGTGAATGTTGATGATGATGATGATGATGATGATGATGGGGGAAAAAGGAATGATGATTGGGGATATGTGATTTCTGTTGAAGTCAATCAATCCTTCATTCTTTTTTCTCATTTTTGCATTTTGTACAGACTTGTAGTGGGTAGTCACAACTCCATAGCTGACATGGATGATGGGTGGTCTGGTCAGGTCAGGTCAGAAGACTATATCTCTATGGAGAAACAAACCCTTTGAATCTTGATGTTACCAACTCTTGTTTGACGGGTTTATTTAGTGTTAACTCAAAAACCAGTTGTTAGTGTTAACATGGAACATTATTATAAGAGAAACAAACATGCATTTAGCCACATTACTTATTGGCCTTGTGATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	390946	393964	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001567.1	PF02045.10	CBFB_NFYA	189	245	3.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.901
SRR1783600	control	37.380
SRR1783602	moderate drought stress	51.918
SRR1811619	moderate drought stress	51.832

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.484
DRR006520	Root Summer glycyrrhizin high producing strain	86.126
DRR006521	Root Winter glycyrrhizin high producing strain	129.999
DRR006522	Root Winter glycyrrhizin high producing strain	126.468
DRR006523	Root Summer glycyrrhizin low producing strain	129.139
DRR006524	Root Summer glycyrrhizin low producing strain	129.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.824
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.041
SRR2868004	Drought Stress (root)	82.682
SRR2967015	Control (root)	81.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	104.817
SRR9715740	Leaf	82.922
SRR9715741	Leaf	133.488
SRR9715739	Root	39.014
SRR9715742	Root	71.400
SRR9715743	Root	62.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.103
SRR8749028	MeJA induced 9h	76.098
SRR8749029	MeJA induced 9h	30.555
SRR8749030	Uninduced	35.794
SRR8749031	Uninduced	13.868
SRR8749032	Uninduced	19.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	104.181
SRR8400027	Control - Root	114.556