Gene detail

Gene detail information of Glyur000027s00001566

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20920.1	2.00E-142	translocation protein-related
NR	XP_004500194.1	0	PREDICTED: uncharacterized protein LOC101503525 [Cicer arietinum]
trEMBL	tr\|I3SHQ4\|I3SHQ4_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39796.1}

Sequence

Transcript Sequence

>Glyur000027s00001566.1
CTTAGCTTTTACAGTTGAATCATGATGGTTCACCTGTTATTAAAATGTTAAGGAAAAAAGGAAGAAGAGAGAGAAAGAGAAAGAGCGTAGGGTAACAGAAAAAATGAAGAGGCCATCGGGAAGCGCAGCAGAGAAGAAGCGCGTGCGACGCTCCTCCGCACCAGATCTCTCCTCCGACGCCACTCCTAGGAAACAAGCCGCCAAGAAAGATGTATATCAGGTGTTTGCTGAGAAGGTGAGAGACCACAAGGACTTGGTTTCTAGGTGGGCTGTTCTACAGGAGACACGTGTAGAGTATTTTAGAGGGAAGGATTTTGCGAACTTCTTGAAAAATCATCCNGAGCTCAAAGATATTCTAGAATCGGATAGGAACTTAGAAACTGAGGATATTGCCAACATTCTACTTGGAAAAAATCTTTTGGTGCGCTGTGATCGCGTGGTAAAAACTCTTCGTCCTGGGAAGAAAAAGTTGTCTACTTGGCCTGCACATTTAGAAATTTTCCCTGAACAAGTATTTTCTGAAAATGATGCTTTTTTTGCTTGGACATTTGTAAAACGCCATCCACTTTGGCAGACNCTCCTCTCGTTTTTCTGGCCTGTGTTAACATTGGCTATTTGCTTATTTCCCGTGTACCCTCATAGCTGCAAACTAATAATACTTTACTCATGCGCTGGGATCCTTTTTCTCATCCTCTCTCTACTTTTGGTAAGAGGTGCACTATTTGGCGCTTTATATATTATCCTTGGAAAGCGGATCTGGTTTTTCCCGAACATTCTTGCCGAGGAAGCAACACTGCGAGAGTTGTTCAGATTTTGGCCCAAGAAAGATGAAGAGGAAAGGCCTAAATGGACAACAAGGATTTTCTATGCTGTTGTGGCTGTGCTGTTCATATTATTGCTGAGGCATCATGCGCCTGATGAAGCTGCCAGAGCAAGGTATCAGAGGAGGGTATCCAACATCATTGACGATGTTCTTGATTGGTCTCCTAGTTTAGCCTTGTCTGGGATGATGGAGAAGCAACAGAATGTGGCTAATGCCACAGGGTCCCCTGATGCTTCCTCACAAGGGAGTGAAACAGGACCGGAGCATACAGCTCCAACTGATGATGATAATGATGCAAAAACTTTCACGGAACAGTATAATACTGAAGAAGTCAATGATAACGTAGAGGATGCAGATGTGTCATTATGGGTTTTGACCCGCGAGCCAACTCGTTTACACCCGGTTCACCGGTGGGCTAGGTTGCAAAAAAATAGACTCACATTTATCCGAGTTATTTGGACCTGGTTCACTTAACTCAGGGATTAAGGTGGGCCAACCCGTGGTGAGCCGGGTCAGTCTGTTTTTTTTTTAATTTTTTTTAATGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	385359	389803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015031 protein transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001566.1	PF03839.11	Sec62	87	232	8.00E-14
Glyur000027s00001566.2	PF03839.11	Sec62	86	232	6.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.476
SRR1783600	control	42.647
SRR1783602	moderate drought stress	44.218
SRR1811619	moderate drought stress	43.574

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.076
DRR006520	Root Summer glycyrrhizin high producing strain	68.011
DRR006521	Root Winter glycyrrhizin high producing strain	203.922
DRR006522	Root Winter glycyrrhizin high producing strain	215.437
DRR006523	Root Summer glycyrrhizin low producing strain	54.771
DRR006524	Root Summer glycyrrhizin low producing strain	54.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.971

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.884
SRR2868004	Drought Stress (root)	48.523
SRR2967015	Control (root)	52.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.561
SRR9715740	Leaf	29.466
SRR9715741	Leaf	30.004
SRR9715739	Root	15.219
SRR9715742	Root	43.776
SRR9715743	Root	40.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.889
SRR8749028	MeJA induced 9h	66.379
SRR8749029	MeJA induced 9h	35.422
SRR8749030	Uninduced	37.407
SRR8749031	Uninduced	22.726
SRR8749032	Uninduced	18.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.249
SRR8400027	Control - Root	66.097